Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38905 - ( hydrophobic protein putative / low temperature and salt responsive protein putative )
17 Proteins interacs with AT2G38905Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedinteraction prediction | FSW = 0.0288
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G51460 | Predictedinteraction prediction | FSW = 0.0820
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT3G05880 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3636
| Unknown | RCI2A (RARE-COLD-INDUCIBLE 2A) |
AT3G05890 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3232
| Unknown | RCI2B (RARE-COLD-INDUCIBLE 2B) |
AT1G57550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5566
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G59580 | Predictedinterologs mapping | FSW = 0.0188
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G46280 | PredictedAffinity Capture-Western | FSW = 0.0245
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G49510 | Predictedinteraction prediction | FSW = 0.0689
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | Predictedinteraction prediction | FSW = 0.0693
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT3G42660 | Predictedinteraction prediction | FSW = 0.0670
| Unknown | NUCLEOTIDE BINDING |
AT3G22480 | Predictedinteraction prediction | FSW = 0.0639
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G29990 | Predictedinteraction prediction | FSW = 0.0600
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G08780 | Predictedinteraction prediction | FSW = 0.0698
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT3G06460 | Predictedinteraction prediction | FSW = 0.1145
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT4G40042 | Predictedinteraction prediction | FSW = 0.0857
| Unknown | PEPTIDASE |
AT1G31820 | Predictedinteraction prediction | FSW = 0.2078
| Unknown | AMINO ACID PERMEASE FAMILY PROTEIN |
AT1G08750 | Predictedinteraction prediction | FSW = 0.0690
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454