Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38905 - ( hydrophobic protein putative / low temperature and salt responsive protein putative )

17 Proteins interacs with AT2G38905
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G66680

Predicted

interaction prediction

FSW = 0.0288

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT3G51460

Predicted

interaction prediction

FSW = 0.0820

Unknown

RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT3G05880

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.3636

Unknown

RCI2A (RARE-COLD-INDUCIBLE 2A)
AT3G05890

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.3232

Unknown

RCI2B (RARE-COLD-INDUCIBLE 2B)
AT1G57550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5566

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT1G59580

Predicted

interologs mapping

FSW = 0.0188

Unknown

ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT2G46280

Predicted

Affinity Capture-Western

FSW = 0.0245

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G49510

Predicted

interaction prediction

FSW = 0.0689

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G23290

Predicted

interaction prediction

FSW = 0.0693

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT3G42660

Predicted

interaction prediction

FSW = 0.0670

Unknown

NUCLEOTIDE BINDING
AT3G22480

Predicted

interaction prediction

FSW = 0.0639

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT1G29990

Predicted

interaction prediction

FSW = 0.0600

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G08780

Predicted

interaction prediction

FSW = 0.0698

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT3G06460

Predicted

interaction prediction

FSW = 0.1145

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT4G40042

Predicted

interaction prediction

FSW = 0.0857

Unknown

PEPTIDASE
AT1G31820

Predicted

interaction prediction

FSW = 0.2078

Unknown

AMINO ACID PERMEASE FAMILY PROTEIN
AT1G08750

Predicted

interaction prediction

FSW = 0.0690

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454