Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39480 - ( PGP6 (P-GLYCOPROTEIN 6) ATPase coupled to transmembrane movement of substances )

60 Proteins interacs with AT2G39480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G23190

Predicted

synthetic growth defect

FSW = 0.0137

Class C:

plasma membrane

 PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE
AT5G01410

Predicted

Synthetic Lethality

FSW = 0.0534

Class C:

plasma membrane

 RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT3G28380

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2538

Class C:

plasma membrane

 PGP17 (P-GLYCOPROTEIN 17) ATP BINDING / ATPASE/ ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G55320

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2687

Class C:

plasma membrane

 PGP20 (P-GLYCOPROTEIN 20) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G19930

Predicted

Phenotypic Enhancement

FSW = 0.2316

Class C:

plasma membrane

 STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT3G28415

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2687

Class C:

plasma membrane

 P-GLYCOPROTEIN PUTATIVE
AT3G28860

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2342

Class C:

plasma membrane

 ABCB19 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER
AT3G28345

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2538

Class C:

plasma membrane

 ABC TRANSPORTER FAMILY PROTEIN
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.1391

Class C:

plasma membrane

 MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G69850

Predicted

Phenotypic Enhancement

FSW = 0.1003

Class C:

plasma membrane

 ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT5G03540

Predicted

Reconstituted Complex

FSW = 0.0976

Class C:

plasma membrane

 ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING
AT5G10080

Predicted

synthetic growth defect

FSW = 0.0340

Class C:

plasma membrane

 ASPARTYL PROTEASE FAMILY PROTEIN
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.1691

Unknown

 MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Synthetic Lethality

interologs mapping

FSW = 0.1158

Unknown

 MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G65430

Predicted

Phenotypic Enhancement

FSW = 0.0487

Unknown

 GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.2099

Unknown

 ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT2G34450

Predicted

Phenotypic Enhancement

FSW = 0.4078

Unknown

 HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G13445

Predicted

Reconstituted Complex

FSW = 0.0842

Unknown

 TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G01210

Predicted

Phenotypic Enhancement

FSW = 0.1068

Unknown

 DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT3G21540

Predicted

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

Synthetic Lethality

FSW = 0.0793

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G25340

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0233

Unknown

 IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT3G18600

Predicted

Reconstituted Complex

FSW = 0.0189

Unknown

 DEAD/DEAH BOX HELICASE PUTATIVE
AT1G10680

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2610

Unknown

 PGP10 (P-GLYCOPROTEIN 10) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G29800

Predicted

Phenotypic Enhancement

FSW = 0.2959

Unknown

 AAA-TYPE ATPASE FAMILY
AT1G29330

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1941

Unknown

 ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT1G01020

Predicted

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

Co-purification

FSW = 0.1478

Unknown

 ARV1
AT4G02570

Predicted

Phenotypic Enhancement

FSW = 0.0219

Unknown

 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT4G15900

Predicted

Phenotypic Enhancement

FSW = 0.0565

Unknown

 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G47880

Predicted

Phenotypic Enhancement

FSW = 0.0119

Unknown

 ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT1G49520

Predicted

Phenotypic Enhancement

Co-purification

FSW = 0.2717

Unknown

 SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G57620

Predicted

Phenotypic Enhancement

FSW = 0.1067

Unknown

 EMP24/GP25L/P24 FAMILY PROTEIN
AT1G61670

Predicted

Phenotypic Enhancement

FSW = 0.1927

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT2G01830

Predicted

Phenotypic Enhancement

FSW = 0.0526

Unknown

 WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G17560

Predicted

Phenotypic Enhancement

FSW = 0.0625

Unknown

 HMGB4 (HIGH MOBILITY GROUP B 4) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT2G23070

Predicted

Phenotypic Enhancement

FSW = 0.0963

Unknown

 CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G24960

Predicted

Phenotypic Enhancement

FSW = 0.1593

Unknown

 UNKNOWN PROTEIN
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.1767

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.2217

Unknown

 APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT1G11510

Predicted

Synthetic Lethality

FSW = 0.0130

Unknown

 DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT3G09800

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.3292

Unknown

 PROTEIN BINDING
AT3G29060

Predicted

Phenotypic Enhancement

FSW = 0.2955

Unknown

 LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK)
AT4G02120

Predicted

Affinity Capture-Western

FSW = 0.1068

Unknown

 CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT4G24040

Predicted

Phenotypic Enhancement

FSW = 0.2486

Unknown

 TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G26510

Predicted

Reconstituted Complex

FSW = 0.0470

Unknown

 ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT5G11570

Predicted

Phenotypic Enhancement

FSW = 0.1878

Unknown

 PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G19300

Predicted

Phenotypic Enhancement

FSW = 0.1640

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G52200

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2964

Unknown

 UNKNOWN PROTEIN
AT5G53120

Predicted

Phenotypic Enhancement

FSW = 0.2216

Unknown

 SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE
AT5G65690

Predicted

Phenotypic Enhancement

FSW = 0.2133

Unknown

 PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING
AT4G16710

Predicted

Phenotypic Enhancement

FSW = 0.1068

Unknown

 GLYCOSYLTRANSFERASE FAMILY PROTEIN 28
AT4G33200

Predicted

Phenotypic Enhancement

FSW = 0.0176

Unknown

 XI-I MOTOR/ PROTEIN BINDING
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.2880

Unknown

 OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT5G04420

Predicted

Phenotypic Enhancement

FSW = 0.1565

Unknown

 KELCH REPEAT-CONTAINING PROTEIN
AT5G20060

Predicted

Synthetic Rescue

Dosage Growth Defect

FSW = 0.0106

Unknown

 PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT3G28360

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2404

Unknown

 PGP16 (P-GLYCOPROTEIN 16) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G28390

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2687

Unknown

 PGP18 (P-GLYCOPROTEIN 18) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G25960

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2964

Unknown

 PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G28010

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2687

Unknown

 PGP14 (P-GLYCOPROTEIN 14) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G01830

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2687

Unknown

 PGP5 (P-GLYCOPROTEIN 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G01820

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2610

Unknown

 PGP3 (P-GLYCOPROTEIN 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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