Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39630 - ( glycosyl transferase family 2 protein )
37 Proteins interacs with AT2G39630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18710 | Experimentalprotein complementation assay | FSW = 0.0976
| Class B:plastidendoplasmic reticulumClass D:plastid (p = 0.78)extracellular (p = 0.86) | SCY1 (SECY HOMOLOG 1) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT2G28800 | Experimentalprotein complementation assay | FSW = 0.0462
| Class B:plastidendoplasmic reticulumClass D:plastid (p = 0.78) | ALB3 (ALBINO 3) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT5G61790 | PredictedPhenotypic Enhancement | FSW = 0.1852
| Class C:endoplasmic reticulum | CALNEXIN 1 (CNX1) |
AT2G01720 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1915
| Class C:endoplasmic reticulum | RIBOPHORIN I FAMILY PROTEIN |
AT5G66680 | Predictedinteraction predictiontwo hybridSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinterologs mappingPhenotypic Enhancement | FSW = 0.2534
| Class C:endoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G09210 | Predictedinterologs mapping | FSW = 0.2462
| Class C:endoplasmic reticulum | CALRETICULIN 2 (CRT2) |
AT5G19690 | PredictedSynthetic Lethality | FSW = 0.2184
| Class C:endoplasmic reticulum | STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) OLIGOSACCHARYL TRANSFERASE |
AT1G34130 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.2420
| Class C:endoplasmic reticulum | STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) OLIGOSACCHARYL TRANSFERASE |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0657
| Class C:endoplasmic reticulum | CALCIUM-TRANSPORTING ATPASE |
AT2G17520 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1633
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0568
| Class C:endoplasmic reticulum | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G67490 | PredictedSynthetic Rescue | FSW = 0.3012
| Class C:endoplasmic reticulum | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
AT1G18260 | Predictedinterologs mapping | FSW = 0.0861
| Class C:endoplasmic reticulum | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G76400 | PredictedSynthetic Lethality | FSW = 0.0738
| Class C:endoplasmic reticulum | RIBOPHORIN I FAMILY PROTEIN |
AT1G32210 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.2178
| Class C:endoplasmic reticulum | ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) |
AT1G07420 | Predictedtwo hybridinteraction prediction | FSW = 0.0369
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0159
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G23580 | Predictedtwo hybrid | FSW = 0.0303
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT4G39220 | Predictedtwo hybrid | FSW = 0.2599
| Unknown | ATRER1A |
AT1G08750 | Predictedtwo hybridinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.1029
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G16560 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2878
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.1636
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G48760 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1091
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G57600 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2893
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.2138
| Unknown | CATALYTIC/ TRANSFERASE |
AT4G39830 | Predictedtwo hybridinteraction prediction | FSW = 0.1062
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT3G50860 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1467
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G09460 | Predictedinterologs mapping | FSW = 0.1453
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G09080 | Predictedinterologs mapping | FSW = 0.1427
| Unknown | BIP3 ATP BINDING |
AT1G24320 | PredictedSynthetic Rescue | FSW = 0.2822
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
AT2G22425 | Predictedtwo hybrid | FSW = 0.0517
| Unknown | PEPTIDASE |
AT2G18240 | Predictedtwo hybrid | FSW = 0.2744
| Unknown | RER1 PROTEIN PUTATIVE |
AT3G55070 | Predictedinteraction predictiontwo hybrid | FSW = 0.0235
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK) |
AT3G27060 | Predictedinteraction prediction | FSW = 0.0283
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT4G40042 | Predictedinteraction prediction | FSW = 0.0439
| Unknown | PEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454