Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39630 - ( glycosyl transferase family 2 protein )

37 Proteins interacs with AT2G39630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G18710

Experimental

protein complementation assay

FSW = 0.0976

Class B:

plastid

endoplasmic reticulum

Class D:

plastid (p = 0.78)

extracellular (p = 0.86)

SCY1 (SECY HOMOLOG 1) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT2G28800

Experimental

protein complementation assay

FSW = 0.0462

Class B:

plastid

endoplasmic reticulum

Class D:

plastid (p = 0.78)

ALB3 (ALBINO 3) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT5G61790

Predicted

Phenotypic Enhancement

FSW = 0.1852

Class C:

endoplasmic reticulum

CALNEXIN 1 (CNX1)
AT2G01720

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1915

Class C:

endoplasmic reticulum

RIBOPHORIN I FAMILY PROTEIN
AT5G66680

Predicted

interaction prediction

two hybrid

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

interologs mapping

Phenotypic Enhancement

FSW = 0.2534

Class C:

endoplasmic reticulum

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT1G09210

Predicted

interologs mapping

FSW = 0.2462

Class C:

endoplasmic reticulum

CALRETICULIN 2 (CRT2)
AT5G19690

Predicted

Synthetic Lethality

FSW = 0.2184

Class C:

endoplasmic reticulum

STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) OLIGOSACCHARYL TRANSFERASE
AT1G34130

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.2420

Class C:

endoplasmic reticulum

STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) OLIGOSACCHARYL TRANSFERASE
AT1G07670

Predicted

Phenotypic Enhancement

FSW = 0.0657

Class C:

endoplasmic reticulum

CALCIUM-TRANSPORTING ATPASE
AT2G17520

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1633

Class C:

endoplasmic reticulum

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G10130

Predicted

interologs mapping

FSW = 0.0568

Class C:

endoplasmic reticulum

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT1G67490

Predicted

Synthetic Rescue

FSW = 0.3012

Class C:

endoplasmic reticulum

GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE
AT1G18260

Predicted

interologs mapping

FSW = 0.0861

Class C:

endoplasmic reticulum

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT1G76400

Predicted

Synthetic Lethality

FSW = 0.0738

Class C:

endoplasmic reticulum

RIBOPHORIN I FAMILY PROTEIN
AT1G32210

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.2178

Class C:

endoplasmic reticulum

ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)
AT1G07420

Predicted

two hybrid

interaction prediction

FSW = 0.0369

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0159

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G23580

Predicted

two hybrid

FSW = 0.0303

Unknown

RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT4G39220

Predicted

two hybrid

FSW = 0.2599

Unknown

ATRER1A
AT1G08750

Predicted

two hybrid

interologs mapping

Phenotypic Enhancement

interaction prediction

FSW = 0.1029

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT1G16560

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2878

Unknown

PER1-LIKE FAMILY PROTEIN
AT1G26450

Predicted

Phenotypic Enhancement

FSW = 0.1636

Unknown

BETA-13-GLUCANASE-RELATED
AT1G48760

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1091

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G57600

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2893

Unknown

MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN
AT2G22530

Predicted

Phenotypic Enhancement

FSW = 0.2138

Unknown

CATALYTIC/ TRANSFERASE
AT4G39830

Predicted

two hybrid

interaction prediction

FSW = 0.1062

Unknown

L-ASCORBATE OXIDASE PUTATIVE
AT3G50860

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1467

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G09460

Predicted

interologs mapping

FSW = 0.1453

Unknown

GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT1G09080

Predicted

interologs mapping

FSW = 0.1427

Unknown

BIP3 ATP BINDING
AT1G24320

Predicted

Synthetic Rescue

FSW = 0.2822

Unknown

ALPHA-GLUCOSIDASE PUTATIVE
AT2G22425

Predicted

two hybrid

FSW = 0.0517

Unknown

PEPTIDASE
AT2G18240

Predicted

two hybrid

FSW = 0.2744

Unknown

RER1 PROTEIN PUTATIVE
AT3G55070

Predicted

interaction prediction

two hybrid

FSW = 0.0235

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK)
AT3G27060

Predicted

interaction prediction

FSW = 0.0283

Unknown

TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING
AT4G40042

Predicted

interaction prediction

FSW = 0.0439

Unknown

PEPTIDASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454