Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39770 - ( CYT1 (CYTOKINESIS DEFECTIVE 1) mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase )
90 Proteins interacs with AT2G39770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.0688
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0719
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G33210 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G56070 | PredictedAffinity Capture-MS | FSW = 0.1153
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0419
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.1267
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT1G74910 | Predictedtwo hybridtwo hybridin vivotwo hybridPhylogenetic profile methodCo-expression | FSW = 0.0552
| Unknown | ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN |
AT3G23990 | PredictedAffinity Capture-MS | FSW = 0.0438
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT2G47470 | PredictedGene fusion method | FSW = 0.0128
| Unknown | UNE5 (UNFERTILIZED EMBRYO SAC 5) PROTEIN DISULFIDE ISOMERASE |
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | BINDING |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.0621
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT4G17140 | PredictedAffinity Capture-MS | FSW = 0.0675
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK) |
AT2G34660 | Predictedtwo hybrid | FSW = 0.0172
| Unknown | ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G11010 | PredictedAffinity Capture-MS | FSW = 0.0521
| Unknown | NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
AT3G52140 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.1698
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0913
| Unknown | DNA HELICASE PUTATIVE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT2G45300 | PredictedAffinity Capture-MS | FSW = 0.0537
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0607
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT3G10050 | PredictedAffinity Capture-MS | FSW = 0.1436
| Unknown | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
AT1G48860 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT5G53480 | Predictedtwo hybridinteraction prediction | FSW = 0.0268
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G48090 | PredictedAffinity Capture-MS | FSW = 0.0496
| Unknown | PHOSPHOINOSITIDE BINDING |
AT1G67120 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.1327
| Unknown | DNA HELICASE-RELATED |
AT5G12250 | PredictedAffinity Capture-MS | FSW = 0.0708
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | RNA BINDING |
AT1G36160 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0611
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0698
| Unknown | PYRUVATE KINASE PUTATIVE |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G12370 | PredictedAffinity Capture-MS | FSW = 0.0297
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT1G50480 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) ATP BINDING / COPPER ION BINDING / FORMATE-TETRAHYDROFOLATE LIGASE |
AT1G04810 | PredictedAffinity Capture-MS | FSW = 0.1141
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0766
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.0558
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G50360 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | ATCEN2 (CENTRIN2) CALCIUM ION BINDING |
AT1G53750 | PredictedAffinity Capture-MS | FSW = 0.0543
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT4G26110 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT1G79930 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | HSP91 ATP BINDING |
AT1G57720 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G23290 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G43190 | Predictedtwo hybridtwo hybrid | FSW = 0.0115
| Unknown | POLYPYRIMIDINE TRACT-BINDING PROTEIN PUTATIVE / HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0289
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G14610 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | TWN2 (TWIN 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / VALINE-TRNA LIGASE |
AT1G15870 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G02050 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT4G23900 | PredictedAffinity Capture-MS | FSW = 0.0347
| Unknown | NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4) |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0832
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT4G31180 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.2746
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT4G26840 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0945
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.1063
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G20850 | PredictedAffinity Capture-MS | FSW = 0.0553
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G29940 | PredictedAffinity Capture-MS | FSW = 0.1023
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G64550 | PredictedAffinity Capture-MS | FSW = 0.1392
| Unknown | ATGCN3 TRANSPORTER |
AT1G79990 | PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G27170 | PredictedAffinity Capture-MS | FSW = 0.0791
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G32730 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G16570 | Predictedinterologs mappinginterologs mappinginterologs mappinginteraction prediction | FSW = 0.0124
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G20575 | Predictedinterologs mapping | FSW = 0.0106
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G78800 | Predictedinterologs mapping | FSW = 0.0479
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT3G03110 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G12670 | PredictedAffinity Capture-MS | FSW = 0.1016
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G60860 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0821
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT3G03960 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | CHAPERONIN PUTATIVE |
AT3G24090 | PredictedAffinity Capture-MS | FSW = 0.1780
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT1G09080 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | BIP3 ATP BINDING |
AT4G26870 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G55810 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G30820 | PredictedAffinity Capture-MS | FSW = 0.1301
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT1G01960 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G04650 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0552
| Unknown | ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN |
AT3G55590 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1042
| Unknown | GDP-MANNOSE PYROPHOSPHORYLASE PUTATIVE |
AT4G30570 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0947
| Unknown | GDP-MANNOSE PYROPHOSPHORYLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454