Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39795 - ( mitochondrial glycoprotein family protein / MAM33 family protein )
19 Proteins interacs with AT2G39795Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2427
| Class C:mitochondrion | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0759
| Class C:mitochondrion | NFU4 STRUCTURAL MOLECULE |
AT5G02050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0412
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G05990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2236
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1797
| Class C:mitochondrion | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.3051
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT1G70490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2727
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G53870 | Predictedbiochemical | FSW = 0.0115
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1988
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G29390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1550
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT1G63660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3159
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G03410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4147
| Unknown | MO25 FAMILY PROTEIN |
AT2G36060 | PredictedAffinity Capture-MS | FSW = 0.0382
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.2478
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2497
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G52560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3750
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.1517
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G12440 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | ADENINE PHOSPHORIBOSYLTRANSFERASE PUTATIVE |
AT3G54150 | PredictedAffinity Capture-MS | FSW = 0.4167
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454