Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39990 - ( EIF2 translation initiation factor )

11 Proteins interacs with AT2G39990
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G11420

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.1039

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT3G57290

Predicted

Affinity Capture-MS

FSW = 0.2028

Unknown

EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR
AT5G52650

Predicted

two hybrid

FSW = 0.0394

Unknown

40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT5G41520

Predicted

two hybrid

Co-expression

FSW = 0.1025

Unknown

40S RIBOSOMAL PROTEIN S10 (RPS10B)
AT3G02200

Predicted

two hybrid

two hybrid

Affinity Capture-MS

Co-expression

FSW = 0.2742

Unknown

PROTEASOME FAMILY PROTEIN
AT3G54230

Predicted

two hybrid

FSW = 0.0336

Unknown

NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT5G14600

Predicted

two hybrid

FSW = 0.0618

Unknown

TRNA (ADENINE-N1-)-METHYLTRANSFERASE
AT5G15610

Predicted

two hybrid

FSW = 0.3208

Unknown

PROTEASOME FAMILY PROTEIN
AT5G54940

Predicted

Affinity Capture-MS

FSW = 0.0829

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G05780

Predicted

Phylogenetic profile method

FSW = 0.1569

Unknown

RPN8A (RP NON-ATPASE SUBUNIT 8A)
AT3G11270

Predicted

Phylogenetic profile method

FSW = 0.0367

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454