Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40490 - ( HEME2 uroporphyrinogen decarboxylase )
9 Proteins interacs with AT2G40490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G06350 | Predictedpull down | FSW = 0.0504
| Class C:plastid | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32) 3-DEHYDROQUINATE DEHYDRATASE/ NADP OR NADPH BINDING / BINDING / CATALYTIC/ SHIKIMATE 5-DEHYDROGENASE |
AT1G09830 | Predictedpull down | FSW = 0.0585
| Class C:plastid | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (PUR2) |
AT3G14930 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1303
| Class C:plastid | HEME1 UROPORPHYRINOGEN DECARBOXYLASE |
AT1G22450 | Predictedtwo hybrid | FSW = 0.1381
| Class C:plastid | COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT5G20920 | PredictedSynthetic Rescue | FSW = 0.1385
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT1G54290 | PredictedSynthetic Rescue | FSW = 0.0419
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G79990 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0289
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454