Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40550 - ( ETG1 (E2F TARGET GENE 1) )

6 Proteins interacs with AT2G40550
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G03415

Experimental

two hybrid

FSW = 0.1161

Class B:

plastid

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION
AT5G02470

Experimental

two hybrid

FSW = 0.0808

Class B:

plastid

nucleus

Class D:

nucleus (p = 0.78)

DPA TRANSCRIPTION FACTOR
AT5G11300

Experimental

two hybrid

FSW = 0.0818

Unknown

CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G07690

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0404

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT4G39370

Predicted

two hybrid

FSW = 0.0697

Unknown

UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT4G01270

Predicted

two hybrid

FSW = 0.0936

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454