Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G40700 - ( DEAD/DEAH box helicase putative (RH17) )
25 Proteins interacs with AT2G40700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1421
| Unknown | RNA BINDING |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0168
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G76810 | PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT2G42520 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0289
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT4G25630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0794
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.1080
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT4G26600 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0788
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G72440 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1258
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G23620 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1307
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G55920 | PredictedAffinity Capture-MS | FSW = 0.1339
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G37990 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1624
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT3G26560 | Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.0317
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.0801
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G34370 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G35930 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0408
| Unknown | AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN |
AT1G03150 | PredictedAffinity Capture-MS | FSW = 0.0591
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
AT1G31970 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.0428
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT2G13680 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0110
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G18220 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2227
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT5G02530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0381
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G21160 | PredictedAffinity Capture-MS | FSW = 0.0872
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G36660 | PredictedGene fusion method | FSW = 0.0750
| Unknown | PAB7 (POLY(A) BINDING PROTEIN 7) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G03540 | PredictedGene fusion method | FSW = 0.0591
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454