Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40700 - ( DEAD/DEAH box helicase putative (RH17) )

25 Proteins interacs with AT2G40700
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.0296

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1421

Unknown

RNA BINDING
AT1G05570

Predicted

interaction prediction

FSW = 0.0168

Unknown

CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G76810Predicted

Affinity Capture-MS

FSW = 0.0566

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT2G42520

Predicted

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.0289

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT4G25630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0794

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G10300Predicted

Affinity Capture-MS

FSW = 0.1080

Unknown

GTP-BINDING PROTEIN-RELATED
AT4G26600

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0788

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0415

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G72440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1258

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G23620

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1307

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT5G55920

Predicted

Affinity Capture-MS

FSW = 0.1339

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT2G37990

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1624

Unknown

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G26560

Predicted

two hybrid

Enriched domain pair

Co-expression

FSW = 0.0317

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.0801

Unknown

GTP-BINDING PROTEIN-RELATED
AT1G34370

Predicted

two hybrid

FSW = 0.0179

Unknown

STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G35930

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0408

Unknown

AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN
AT1G03150

Predicted

Affinity Capture-MS

FSW = 0.0591

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT1G31970

Predicted

Affinity Capture-Western

synthetic growth defect

FSW = 0.0428

Unknown

STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G13680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0110

Unknown

CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT2G18220

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2227

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT5G02530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0381

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G21160

Predicted

Affinity Capture-MS

FSW = 0.0872

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G36660

Predicted

Gene fusion method

FSW = 0.0750

Unknown

PAB7 (POLY(A) BINDING PROTEIN 7) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G03540

Predicted

Gene fusion method

FSW = 0.0591

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454