Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40730 - ( HEAT repeat-containing protein )

9 Proteins interacs with AT2G40730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G21410

Predicted

Affinity Capture-MS

FSW = 0.0368

Unknown

VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT1G07940Predicted

synthetic growth defect

Affinity Capture-Western

FSW = 0.0413

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT4G26110

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT2G19480

Predicted

Affinity Capture-MS

FSW = 0.0229

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT1G72560

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0304

Unknown

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0187

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT5G06120

Predicted

two hybrid

FSW = 0.0504

Unknown

RAN-BINDING PROTEIN PUTATIVE
AT3G09980

Predicted

two hybrid

Affinity Capture-Western

in vivo

FSW = 0.0482

Unknown

UNKNOWN PROTEIN
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0132

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454