Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40930 - ( UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) ubiquitin-specific protease )
20 Proteins interacs with AT2G40930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G64190 | PredictedSynthetic Lethality | FSW = 0.0574
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G26340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinterologs mapping | FSW = 0.1825
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G53960 | PredictedAffinity Capture-MS | FSW = 0.2077
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G09680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1341
| Unknown | 40S RIBOSOMAL PROTEIN S23 (RPS23A) |
AT5G60980 | PredictedAffinity Capture-MS | FSW = 0.0860
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G24090 | PredictedAffinity Capture-MS | FSW = 0.2485
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G05170 | PredictedAffinity Capture-MS | FSW = 0.0680
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.1217
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.1555
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0127
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G41820 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-Westerninterologs mappingAffinity Capture-MS | FSW = 0.1910
| Unknown | GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT-RELATED / RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT-RELATED |
AT3G45240 | PredictedAffinity Capture-MS | FSW = 0.1317
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47300 | PredictedAffinity Capture-MS | FSW = 0.4000
| Unknown | SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING |
AT3G61740 | PredictedAffinity Capture-MS | FSW = 0.1870
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G27130 | PredictedAffinity Capture-MS | FSW = 0.0771
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G55180 | PredictedAffinity Capture-MS | FSW = 0.3531
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G32850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1177
| Unknown | UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE |
AT4G10570 | PredictedPhylogenetic profile method | FSW = 0.1422
| Unknown | UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE |
AT4G10590 | PredictedPhylogenetic profile method | FSW = 0.2560
| Unknown | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454