Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G41530 - ( SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-formylglutathione hydrolase/ hydrolase acting on ester bonds )
83 Proteins interacs with AT2G41530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49010 | PredictedPhenotypic Suppression | FSW = 0.0390
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.0683
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.3405
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.2171
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G28710 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0396
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.4122
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.2175
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.3413
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.2274
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.2955
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2344
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0498
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G31170 | Predictedco-fractionationCo-fractionation | FSW = 0.2104
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.4718
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G12230 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | TRANSALDOLASE PUTATIVE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0882
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G32990 | Predictedpull down | FSW = 0.0143
| Unknown | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3490
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.2473
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.3715
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4923
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0718
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4480
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0096
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.1290
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0899
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1523
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4919
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.3042
| Unknown | ZINC ION BINDING |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0822
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.2124
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G44500 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3221
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.2617
| Unknown | HISTONE H2B PUTATIVE |
AT3G10920 | PredictedAffinity Capture-Western | FSW = 0.3406
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.3210
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4453
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.2779
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3483
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G35640 | PredictedAffinity Capture-MS | FSW = 0.0593
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4619
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G10660 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G27550 | PredictedAffinity Capture-MS | FSW = 0.1089
| Unknown | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING |
AT2G20060 | Predictedpull down | FSW = 0.0051
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.2339
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3954
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | Predictedco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.4341
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G59730 | PredictedAffinity Capture-MS | FSW = 0.1185
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT1G64480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3456
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.2126
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G78970 | PredictedPhenotypic Suppression | FSW = 0.1159
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.4476
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1602
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.2643
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2355
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.2793
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5123
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.1323
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G34250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2340
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3190
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5491
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.4437
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.5154
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4078
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4379
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3086
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4422
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.5408
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G08650 | PredictedPhenotypic Suppression | FSW = 0.0468
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.2978
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3613
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3848
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT4G16265 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.2432
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.3237
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.3628
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3230
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G19660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2718
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4000
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.4127
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4645
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.3519
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454