Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G41620 - ( nucleoporin interacting component family protein )

14 Proteins interacs with AT2G41620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0064

Class A:

nucleus

Class B:

vacuole

plasma membrane

peroxisome

cytosol

cytoskeleton

Class D:

cytosol (p = 0.67)

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G07698

Predicted

two hybrid

FSW = 0.0362

Class C:

nucleus

ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
AT1G79280

Predicted

Affinity Capture-Western

FSW = 0.0471

Class C:

nucleus

NUA (NUCLEAR PORE ANCHOR)
AT5G43900

Predicted

two hybrid

FSW = 0.0181

Class C:

nucleus

MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT1G27310

Predicted

interologs mapping

FSW = 0.0448

Class C:

nucleus

NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT1G24310

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

interaction prediction

Co-expression

FSW = 0.0444

Class C:

nucleus

UNKNOWN PROTEIN
AT4G28510

Predicted

Affinity Capture-MS

FSW = 0.0585

Unknown

ATPHB1 (PROHIBITIN 1)
AT2G30970

Predicted

two hybrid

FSW = 0.0362

Unknown

ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE
AT1G22840

Predicted

two hybrid

FSW = 0.0362

Unknown

CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT2G14120

Predicted

two hybrid

FSW = 0.0109

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT1G16980

Predicted

two hybrid

FSW = 0.0269

Unknown

ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G06000

Predicted

interologs mapping

FSW = 0.0523

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT2G16090

Predicted

two hybrid

FSW = 0.0188

Unknown

ZINC FINGER PROTEIN-RELATED
AT5G19820

Predicted

interaction prediction

FSW = 0.0095

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454