Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G41670 - ( GTP-binding family protein )

8 Proteins interacs with AT2G41670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G11910

Predicted

two hybrid

FSW = 0.0381

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT5G47200

Predicted

in vitro

FSW = 0.0269

Unknown

ATRAB1A GTP BINDING
AT2G02760

Predicted

Synthetic Lethality

FSW = 0.0146

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT5G05450

Predicted

Affinity Capture-MS

FSW = 0.0750

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.0195

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G23420

Predicted

synthetic growth defect

FSW = 0.0361

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G14400

Predicted

Synthetic Lethality

FSW = 0.0262

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT4G04460

Predicted

interaction prediction

FSW = 0.0909

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454