Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G41860 - ( CPK14 ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase )
31 Proteins interacs with AT2G41860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G51850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7505
| Unknown | CPK13 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G22780 | Predictedin vivo | FSW = 0.0046
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0106
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G23650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6410
| Unknown | CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G35670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4808
| Unknown | ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT1G74740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6154
| Unknown | CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT1G61950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6993
| Unknown | CPK19 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04720 | PredictedPhylogenetic profile method | FSW = 0.2903
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G66210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7396
| Unknown | CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G17890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7505
| Unknown | CPK16 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G19450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5641
| Unknown | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G57530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5495
| Unknown | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G12480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2821
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G17440 | Predictedin vitrotwo hybrid | FSW = 0.0168
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G09570 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3740
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT3G07140 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT2G29100 | Predictedin vitro | FSW = 0.0471
| Unknown | ATGLR29 INTRACELLULAR LIGAND-GATED ION CHANNEL |
AT2G29110 | Predictedin vitro | FSW = 0.0941
| Unknown | ATGLR28 INTRACELLULAR LIGAND-GATED ION CHANNEL |
AT1G47500 | Predictedtwo hybrid | FSW = 0.0355
| Unknown | ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING |
AT5G04850 | PredictedAffinity Capture-MS | FSW = 0.0945
| Unknown | VPS602 |
AT5G19360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5829
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G23580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7564
| Unknown | CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G12180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7692
| Unknown | CPK17 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G36070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4824
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G50700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7564
| Unknown | CPK33 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04700 | PredictedPhylogenetic profile method | FSW = 0.2484
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G04695 | PredictedPhylogenetic profile method | FSW = 0.2663
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G56310 | PredictedGene fusion method | FSW = 0.1368
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G63320 | PredictedGene fusion method | FSW = 0.1481
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BROMODOMAIN (INTERPROIPR001487) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9) DNA BINDING (TAIRAT5G142701) HAS 44558 BLAST HITS TO 24285 PROTEINS IN 1236 SPECIES ARCHAE - 185 BACTERIA - 3450 METAZOA - 19774 FUNGI - 4003 PLANTS - 1404 VIRUSES - 349 OTHER EUKARYOTES - 15393 (SOURCE NCBI BLINK) |
AT5G19350 | PredictedGene fusion method | FSW = 0.0541
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
AT4G12400 | PredictedGene fusion method | FSW = 0.0684
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454