Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G42500 - ( PP2A-4 hydrolase/ protein serine/threonine phosphatase )
48 Proteins interacs with AT2G42500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0263
| Class C:plasma membrane | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G53850 | PredictedAffinity Capture-MS | FSW = 0.3089
| Class C:plasma membrane | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G60820 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2317
| Class C:plasma membrane | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G25800 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0859
| Class C:plasma membrane | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G10430 | PredictedPhylogenetic profile method | FSW = 0.4628
| Class C:plasma membrane | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G42790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2131
| Class C:plasma membrane | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G79930 | PredictedAffinity Capture-MS | FSW = 0.0224
| Class C:plasma membrane | HSP91 ATP BINDING |
AT1G59830 | PredictedPhylogenetic profile method | FSW = 0.2303
| Class C:plasma membrane | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G21720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2557
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2283
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2626
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G47470 | PredictedGene fusion method | FSW = 0.0231
| Unknown | UNE5 (UNFERTILIZED EMBRYO SAC 5) PROTEIN DISULFIDE ISOMERASE |
AT4G10050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0690
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT3G22110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1041
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2604
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1270
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G58500 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.2225
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G19980 | Predictedinterologs mappingPhylogenetic profile method | FSW = 0.0569
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G22330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0268
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT2G32410 | PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | AXL (AXR1-LIKE) BINDING / CATALYTIC |
AT4G26720 | PredictedPhylogenetic profile method | FSW = 0.1330
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G35670 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT4G21010 | PredictedAffinity Capture-MS | FSW = 0.0326
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G03280 | PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT3G15220 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0125
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G64040 | PredictedPhylogenetic profile method | FSW = 0.1667
| Unknown | TOPP3 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G34270 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.1138
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT3G52090 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0187
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G13060 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2197
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | Predictedinteraction prediction | FSW = 0.1551
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G45550 | Predictedinterologs mapping | FSW = 0.0407
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
AT1G69960 | PredictedPhylogenetic profile method | FSW = 0.3148
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G18390 | PredictedCo-purification | FSW = 0.0346
| Unknown | TTN5 (TITAN 5) GTP BINDING / GTPASE |
AT5G55260 | PredictedAffinity Capture-MSPhylogenetic profile method | FSW = 0.2828
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G08880 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0176
| Unknown | H2AXA DNA BINDING |
AT1G17720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernsynthetic growth defectSynthetic Rescueinteraction prediction | FSW = 0.0636
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G29940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0112
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G56450 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2557
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G79210 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1465
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT3G26020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0476
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G08960 | PredictedReconstituted Complexinterologs mappingAffinity Capture-Western | FSW = 0.1361
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT5G53000 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.3148
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G11820 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0239
| Unknown | MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
AT5G40580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.3191
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G50370 | PredictedPhylogenetic profile method | FSW = 0.1120
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT3G05580 | PredictedPhylogenetic profile method | FSW = 0.1667
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G27840 | PredictedPhylogenetic profile method | FSW = 0.1522
| Unknown | TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G25210 | PredictedGene fusion method | FSW = 0.0692
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G278001) HAS 13348 BLAST HITS TO 4225 PROTEINS IN 143 SPECIES ARCHAE - 3 BACTERIA - 6 METAZOA - 114 FUNGI - 126 PLANTS - 12736 VIRUSES - 0 OTHER EUKARYOTES - 363 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454