Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G42580 - ( TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) binding / protein binding )
38 Proteins interacs with AT2G42580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G52300 | Experimentalphage display | FSW = 0.0239
| Unknown | ATPQ (ATP SYNTHASE D CHAIN MITOCHONDRIAL) HYDROGEN ION TRANSMEMBRANE TRANSPORTER |
AT3G16640 | Experimentalphage display | FSW = 0.0476
| Unknown | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) |
AT5G11670 | Experimentalphage display | FSW = 0.0355
| Unknown | ATNADP-ME2 (NADP-MALIC ENZYME 2) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT4G23670 | Experimentalphage display | FSW = 0.0488
| Unknown | MAJOR LATEX PROTEIN-RELATED / MLP-RELATED |
AT2G41410 | Experimentalphage display | FSW = 0.0211
| Unknown | CALMODULIN PUTATIVE |
AT2G34480 | Experimentalphage display | FSW = 0.0091
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G80300 | Experimentalphage display | FSW = 0.0211
| Unknown | NTT1 (NUCLEOTIDE TRANSPORTER 1) ATPADP ANTIPORTER |
AT5G42980 | Experimentalphage display | FSW = 0.0162
| Unknown | ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G29930 | Experimentalphage display | FSW = 0.0224
| Unknown | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) CHLOROPHYLL BINDING |
AT1G42970 | Experimentalphage display | FSW = 0.0229
| Unknown | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G16770 | Experimentalphage display | FSW = 0.0229
| Unknown | ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G02740 | Experimentalphage display | FSW = 0.0150
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G74050 | Experimentalphage display | FSW = 0.0195
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6C) |
AT1G62380 | Experimentalphage display | FSW = 0.0229
| Unknown | ACO2 (ACC OXIDASE 2) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE |
AT1G75750 | Experimentalphage display | FSW = 0.0780
| Unknown | GASA1 (GAST1 PROTEIN HOMOLOG 1) |
AT2G01950 | Experimentalphage display | FSW = 0.0451
| Unknown | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT4G14130 | Experimentalphage display | FSW = 0.0211
| Unknown | XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT2G27330 | Experimentalphage display | FSW = 0.0976
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G10985 | Experimentalphage display | FSW = 0.0976
| Unknown | SAG20 (SENESCENCE ASSOCIATED GENE 20) |
AT3G62120 | Experimentalphage display | FSW = 0.0156
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT3G12630 | Experimentalphage display | FSW = 0.0976
| Unknown | ZINC FINGER (AN1-LIKE) FAMILY PROTEIN |
AT5G03230 | Experimentalphage display | FSW = 0.0557
| Unknown | UNKNOWN PROTEIN |
AT5G38530 | Experimentalphage display | FSW = 0.0211
| Unknown | TRYPTOPHAN SYNTHASE-RELATED |
AT5G42440 | Experimentalphage display | FSW = 0.0239
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G55090 | Experimentalphage display | FSW = 0.0145
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G12440 | Experimentalphage display | FSW = 0.1429
| Unknown | ZINC FINGER (AN1-LIKE) FAMILY PROTEIN |
AT1G76920 | Experimentalphage display | FSW = 0.0046
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT3G14400 | Experimentalphage display | FSW = 0.0976
| Unknown | UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT4G14440 | Experimentalphage display | FSW = 0.0780
| Unknown | HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) CARNITINE RACEMASE/ CATALYTIC/ DODECENOYL-COA DELTA-ISOMERASE |
AT5G63190 | Experimentalphage display | FSW = 0.0659
| Unknown | MA3 DOMAIN-CONTAINING PROTEIN |
AT1G49600 | Experimentalphage display | FSW = 0.0279
| Unknown | ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A) RNA BINDING |
AT2G30520 | Experimentalphage display | FSW = 0.0976
| Unknown | RPT2 (ROOT PHOTOTROPISM 2) PROTEIN BINDING |
AT1G53400 | Experimentalphage display | FSW = 0.0780
| Unknown | UNKNOWN PROTEIN |
AT1G69420 | Experimentalphage display | FSW = 0.0216
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT2G29340 | Experimentalphage display | FSW = 0.0093
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G24830 | Experimentalphage display | FSW = 0.0081
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G26450 | Experimentalphage display | FSW = 0.0650
| Unknown | MAJOR LATEX PROTEIN-RELATED / MLP-RELATED |
AT5G37660 | Experimentalphage display | FSW = 0.0211
| Unknown | PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454