Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G42810 - ( PP52 (PROTEIN PHOSPHATASE 52) phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase )
18 Proteins interacs with AT2G42810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18790 | Experimentaltwo hybrid | FSW = 0.0496
| Class D:cytosol (p = 0.67) | PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT1G09570 | Experimentaltwo hybrid | FSW = 0.0655
| Class D:cytosol (p = 0.67) | PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT5G56000 | Predictedin vivo | FSW = 0.0744
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT2G30390 | Predictedinteraction predictiontwo hybrid | FSW = 0.0381
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
AT5G56030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0331
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G38480 | Predictedtwo hybridinteraction prediction | FSW = 0.0127
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G52640 | PredictedAffinity Capture-MSAffinity Capture-MSin vivotwo hybridAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.0058
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G61900 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | BON1 (BONZAI 1) CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT3G15620 | Predictedin vitro | FSW = 0.0356
| Unknown | UVR3 (UV REPAIR DEFECTIVE 3) DNA (6-4) PHOTOLYASE |
AT4G34390 | Predictedin vitroin vivo | FSW = 0.0511
| Unknown | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT5G44090 | Predictedin vivoEnriched domain pairCo-expression | FSW = 0.1524
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN PUTATIVE / PROTEIN PHOSPHATASE 2A 62 KDA B REGULATORY SUBUNIT PUTATIVE |
AT1G78770 | Predictedtwo hybridin vitro | FSW = 0.0153
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G20000 | Predictedin vitrotwo hybrid | FSW = 0.0315
| Unknown | HBT (HOBBIT) BINDING |
AT3G16320 | Predictedtwo hybridin vitro | FSW = 0.0655
| Unknown | CDC27A BINDING |
AT5G28850 | Predictedin vivo | FSW = 0.0381
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G26020 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT1G13460 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT1G19880 | PredictedGene fusion method | FSW = 0.0482
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454