Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43160 - ( epsin N-terminal homology (ENTH) domain-containing protein )
27 Proteins interacs with AT2G43160| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G08530
   | ExperimentalReconstituted Complexin vitro | FSW = 0.0498
| Class A:plasma membraneClass B:vacuoleplastid | CLATHRIN HEAVY CHAIN PUTATIVE |
| AT1G26670
| ExperimentalReconstituted Complexin vitro | FSW = 0.0242
| Class A:plasma membraneClass B:vacuoleClass D:nucleus (p = 0.78) | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
| AT5G22770
| ExperimentalReconstituted Complexin vitro | FSW = 0.0541
| Class A:plasma membraneClass B:vacuoleClass D:nucleus (p = 0.78) | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT1G48760
| ExperimentalReconstituted Complexin vitro | FSW = 0.0119
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT4G19640
| Predictedinterologs mappinginterologs mapping | FSW = 0.0135
| Class C:vacuoleplasma membrane | ARA7 GTP BINDING |
| AT5G09590
| PredictedSynthetic Lethality | FSW = 0.0087
| Class C:vacuole | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT3G13560
| Predictedtwo hybrid | FSW = 0.0173
| Class C:plasma membrane | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT3G56450
| Predictedtwo hybrid | FSW = 0.0324
| Class C:plasma membrane | ALPHA-SNAP1 BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT3G21620
| Predictedtwo hybrid | FSW = 0.1109
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT1G20760
| Predictedin vitro | FSW = 0.0074
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT4G11380
| Predictedtwo hybridtwo hybrid | FSW = 0.0799
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
| AT1G21630
| Predictedin vivo | FSW = 0.0833
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT3G53870
| Predictedinterologs mapping | FSW = 0.0146
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT3G14420
| PredictedAffinity Capture-Western | FSW = 0.0314
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
| AT2G39290
| PredictedAffinity Capture-MS | FSW = 0.0596
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
| AT4G29510
| PredictedAffinity Capture-MS | FSW = 0.0777
| Unknown | PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE |
| AT4G34430
| Predictedtwo hybrid | FSW = 0.0199
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT1G29330
| Predictedtwo hybridtwo hybrid | FSW = 0.0151
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
| AT2G40010
| Predictedtwo hybrid | FSW = 0.0194
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
| AT2G43190
| PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
| AT4G12790
| PredictedAffinity Capture-MS | FSW = 0.1166
| Unknown | ATP-BINDING FAMILY PROTEIN |
| AT5G08600
| PredictedAffinity Capture-MS | FSW = 0.1078
| Unknown | U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN |
| AT3G10910
| PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT3G12990
| PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
| AT5G01760
| PredictedAffinity Capture-Western | FSW = 0.1078
| Unknown | VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN |
| AT1G23900
| PredictedReconstituted Complextwo hybrid | FSW = 0.0952
| Unknown | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT1G13290
| Predictedtwo hybrid | FSW = 0.0410
| Unknown | DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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