Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43190 - ( ribonuclease P family protein )
57 Proteins interacs with AT2G43190| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G63400
   | PredictedAffinity Capture-Western | FSW = 0.0084
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT2G43160
| PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
| AT3G26590
| Predictedbiochemical | FSW = 0.0418
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT5G07090
| PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
| AT5G13450
| PredictedSynthetic Lethality | FSW = 0.0853
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
| AT5G01410
| PredictedDosage Growth Defect | FSW = 0.1032
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT2G45130
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0865
| Unknown | SPX3 (SPX DOMAIN GENE 3) |
| AT1G74710
| Predictedtwo hybrid | FSW = 0.0113
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
| AT2G39290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0606
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
| AT1G19660
| PredictedDosage Growth Defect | FSW = 0.0755
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
| AT1G66430
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0934
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
| AT5G03650
| PredictedDosage Growth Defect | FSW = 0.0548
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
| AT1G02500
| PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0229
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
| AT5G27630
| PredictedAffinity Capture-MS | FSW = 0.0585
| Unknown | ACBP5 (ACYL-COA BINDING PROTEIN 5) ACYL-COA BINDING |
| AT5G47510
| Predictedinterologs mapping | FSW = 0.0924
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT3G21620
| Predictedtwo hybrid | FSW = 0.0361
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT5G63880
| Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | VPS201 |
| AT4G18800
| PredictedAffinity Capture-Western | FSW = 0.0227
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
| AT4G13980
| Predictedbiochemical | FSW = 0.0474
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G40290
| PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT4G31720
| Predictedtwo hybrid | FSW = 0.0028
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
| AT1G53530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybridco-fractionationCo-fractionationDosage Growth DefectAffinity Capture-Western | FSW = 0.1789
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
| AT2G22540
| Predictedbiochemical | FSW = 0.0454
| Unknown | SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING |
| AT5G63960
| PredictedDosage Growth Defect | FSW = 0.0562
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G49650
| Predictedtwo hybrid | FSW = 0.0107
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT1G04635
| PredictedAffinity Capture-MSReconstituted Complexin vitro | FSW = 0.1587
| Unknown | EMB1687 (EMBRYO DEFECTIVE 1687) RIBONUCLEASE P/ RIBONUCLEASE |
| AT1G76010
| PredictedReconstituted Complexin vitro | FSW = 0.1731
| Unknown | NUCLEIC ACID BINDING |
| AT2G47300
| PredictedReconstituted ComplexAffinity Capture-MS | FSW = 0.0813
| Unknown | RIBONUCLEASE P |
| AT4G01790
| Predictedtwo hybridAffinity Capture-MSReconstituted ComplexCo-expression | FSW = 0.2154
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN / RIBONUCLEASE P-RELATED |
| AT5G59980
| Predictedtwo hybrid | FSW = 0.0850
| Unknown | RNASE P SUBUNIT P30 FAMILY PROTEIN |
| AT1G11510
| PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0288
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
| AT1G80710
| PredictedPhenotypic EnhancementSynthetic LethalitySynthetic LethalitySynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.3249
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G27920
| Predictedtwo hybrid | FSW = 0.0887
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
| AT1G08120
| PredictedAffinity Capture-MS | FSW = 0.1032
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ATP BINDING / CATALYTIC/ PROTEIN KINASE (TAIRAT5G261101) HAS 380 BLAST HITS TO 380 PROTEINS IN 166 SPECIES ARCHAE - 115 BACTERIA - 0 METAZOA - 110 FUNGI - 39 PLANTS - 20 VIRUSES - 0 OTHER EUKARYOTES - 96 (SOURCE NCBI BLINK) |
| AT1G08260
| PredictedDosage Growth Defect | FSW = 0.0196
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT1G12130
| Predictedinterologs mapping | FSW = 0.0224
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
| AT1G29150
| PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT1G34340
| PredictedDosage Growth Defect | FSW = 0.0645
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
| AT1G58340
| PredictedAffinity Capture-MS | FSW = 0.0393
| Unknown | ZF14 ANTIPORTER/ DRUG TRANSPORTER/ TRANSPORTER |
| AT1G60680
| PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G24050
| PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
| AT2G32415
| PredictedAffinity Capture-Western | FSW = 0.0407
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
| AT2G34180
| PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G06470
| PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT3G12490
| PredictedDosage Growth Defect | FSW = 0.0258
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
| AT3G52890
| PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | KIPK (KCBP-INTERACTING PROTEIN KINASE) KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT3G57140
| PredictedAffinity Capture-MS | FSW = 0.0615
| Unknown | PATATIN-RELATED |
| AT3G62770
| PredictedDosage Growth Defect | FSW = 0.0228
| Unknown | ATATG18A |
| AT4G14240
| Predictedbiochemical | FSW = 0.0262
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
| AT5G14050
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0098
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G24840
| PredictedDosage Growth Defect | FSW = 0.0247
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
| AT5G57950
| PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT5G66640
| Predictedbiochemical | FSW = 0.0479
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
| AT3G16565
| PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G62930
| Predictedsynthetic growth defect | FSW = 0.0429
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
| AT4G09310
| PredictedAffinity Capture-MS | FSW = 0.0594
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
| AT2G47290 | PredictedAffinity Capture-MS | FSW = 0.1093
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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