Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43370 - ( U1 small nuclear ribonucleoprotein 70 kDa putative )

17 Proteins interacs with AT2G43370
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G55310

Experimental

interaction detection method

FSW = 0.5961

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR33 RNA BINDING / PROTEIN BINDING
AT1G16610

Experimental

interaction detection method

FSW = 0.1425

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR45 RNA BINDING / PROTEIN BINDING
AT5G18810

Experimental

Reconstituted Complex

FSW = 0.6494

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G55460

Experimental

Reconstituted Complex

FSW = 0.6676

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G13570

Experimental

Reconstituted Complex

FSW = 0.6494

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G09140

Experimental

Reconstituted Complex

FSW = 0.4126

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SF2/ASF-LIKE SPLICING MODULATOR (SRP30)
AT1G02840

Experimental

Reconstituted Complex

FSW = 0.3551

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G23860

Experimental

Reconstituted Complex

FSW = 0.5182

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) PROTEIN BINDING
AT2G37340

Experimental

Reconstituted Complex

FSW = 0.6419

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G63400

Experimental

confocal microscopy

FSW = 0.4689

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT5G64200

Experimental

Reconstituted Complex

FSW = 0.2800

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G35530

Experimental

FSW = 0.1714

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN
AT1G32150

Experimental

FSW = 0.1714

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN
AT3G61860

Experimental

Reconstituted Complex

FSW = 0.3920

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 RSP31 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G25500

Experimental

Reconstituted Complex

FSW = 0.2449

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 ATRSP35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G17760

Experimental

FSW = 0.0157

Unknown

 CSTF77 PROTEIN BINDING
AT5G61600

Experimental

FSW = 0.2143

Unknown

 ETHYLENE-RESPONSIVE ELEMENT-BINDING FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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