Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43650 - ( EMB2777 (EMBRYO DEFECTIVE 2777) )
28 Proteins interacs with AT2G43650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedSynthetic Lethality | FSW = 0.0245
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G04910 | PredictedSynthetic Lethality | FSW = 0.0148
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G01370 | Predictedbiochemical | FSW = 0.0051
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT2G47250 | Predictedtwo hybridCo-expression | FSW = 0.0626
| Unknown | RNA HELICASE PUTATIVE |
AT3G12110 | PredictedSynthetic Lethality | FSW = 0.0218
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G17310 | PredictedAffinity Capture-MS | FSW = 0.1143
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT3G03250 | PredictedAffinity Capture-MS | FSW = 0.1947
| Unknown | UGP (UDP-GLUCOSE PYROPHOSPHORYLASE) UTPGLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT2G17520 | Predictedbiochemical | FSW = 0.0057
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0115
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G25630 | PredictedSynthetic LethalityCo-expression | FSW = 0.0454
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT2G41500 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0403
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT3G52940 | Predictedinteraction predictiontwo hybrid | FSW = 0.0298
| Unknown | FK (FACKEL) DELTA14-STEROL REDUCTASE |
AT3G05060 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0789
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT3G62310 | Predictedinteraction predictionCo-expression | FSW = 0.0272
| Unknown | RNA HELICASE PUTATIVE |
AT4G20400 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN |
AT5G66540 | Predictedinteraction predictionAffinity Capture-MStwo hybridCo-expression | FSW = 0.0974
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT1G79250 | Predictedbiochemical | FSW = 0.0304
| Unknown | AGC17 (AGC KINASE 17) KINASE |
AT1G17690 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1465
| Unknown | UNKNOWN PROTEIN |
AT2G32850 | Predictedbiochemical | FSW = 0.0087
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G37840 | Predictedbiochemical | FSW = 0.0252
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G17830 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | PEPTIDASE M20/M25/M40 FAMILY PROTEIN |
AT2G37550 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G34150 | Predictedinteraction predictiontwo hybrid | FSW = 0.0216
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT2G18840 | Predictedtwo hybrid | FSW = 0.0662
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT2G34980 | Predictedinteraction predictiontwo hybrid | FSW = 0.0144
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT1G23900 | Predictedinteraction predictiontwo hybrid | FSW = 0.0272
| Unknown | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G53710 | Predictedinteraction prediction | FSW = 0.0776
| Unknown | AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454