Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44065 - ( ribosomal protein L2 family protein )
39 Proteins interacs with AT2G44065| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G57110
   | Experimentalfar western blotting | FSW = 0.0254
| Unknown | ACA8 (AUTOINHIBITED CA2+ -ATPASE ISOFORM 8) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / PROTEIN SELF-ASSOCIATION |
| AT3G46090
| Experimental | FSW = 0.0081
| Unknown | ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT4G21980
| PredictedPhenotypic Enhancement | FSW = 0.0889
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
| AT3G26590
| Predictedbiochemical | FSW = 0.0090
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT2G04940
| Predictedinterologs mapping | FSW = 0.0454
| Unknown | SCRAMBLASE-RELATED |
| AT1G18540
| PredictedAffinity Capture-MS | FSW = 0.0571
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT5G06290
| Predictedbiochemical | FSW = 0.0088
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
| AT3G11630
| Predictedsynthetic growth defect | FSW = 0.0583
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT5G51820
| PredictedPhenotypic Suppression | FSW = 0.0381
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
| AT3G48930
| Predictedbiochemical | FSW = 0.0076
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G41060
| PredictedSynthetic Lethality | FSW = 0.0419
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
| AT5G61510
| Predictedtwo hybrid | FSW = 0.0493
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT4G18800
| PredictedPhenotypic Suppression | FSW = 0.0170
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
| AT4G26600
| PredictedAffinity Capture-MS | FSW = 0.0302
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G19210
| Predictedsynthetic growth defect | FSW = 0.0533
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT4G39200
| PredictedAffinity Capture-MS | FSW = 0.0537
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
| AT2G05840
| PredictedPhenotypic Suppression | FSW = 0.0242
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G17190
| PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT5G20850
| Predictedsynthetic growth defect | FSW = 0.0321
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
| AT1G02100
| PredictedPhenotypic Suppression | FSW = 0.0155
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
| AT1G27040
| PredictedPhenotypic Suppression | FSW = 0.0192
| Unknown | NITRATE TRANSPORTER PUTATIVE |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT1G09270
| PredictedPhenotypic Enhancement | FSW = 0.0340
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
| AT1G21370
| PredictedPhenotypic Enhancement | FSW = 0.0439
| Unknown | UNKNOWN PROTEIN |
| AT2G03130
| PredictedPhenotypic Suppression | FSW = 0.0474
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT4G14240
| Predictedbiochemical | FSW = 0.0046
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
| AT5G24410
| PredictedAffinity Capture-MS | FSW = 0.0696
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
| AT5G38890
| Predictedinterologs mapping | FSW = 0.0075
| Unknown | EXORIBONUCLEASE-RELATED |
| AT5G66640
| Predictedbiochemical | FSW = 0.0152
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
| AT2G47570
| PredictedPhenotypic Enhancement | FSW = 0.0848
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
| AT2G48100
| PredictedPhenotypic Suppression | FSW = 0.0331
| Unknown | EXONUCLEASE FAMILY PROTEIN |
| AT5G06420
| PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT1G15440
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0299
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G13780
| Predictedsynthetic growth defectCo-expression | FSW = 0.0357
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT4G25120 | Predictedsynthetic growth defectCo-expression | FSW = 0.0395
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
| AT1G80410
| Predictedsynthetic growth defect | FSW = 0.0187
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT1G14400
| Predictedsynthetic growth defect | FSW = 0.0447
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
| AT1G06080
| PredictedSynthetic Lethality | FSW = 0.0123
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
| AT5G40490
| Predictedtwo hybrid | FSW = 0.0889
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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