Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G44150 - ( ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) histone-lysine N-methyltransferase )
111 Proteins interacs with AT2G44150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G27240 | PredictedSynthetic Lethality | FSW = 0.0197
| Unknown | CYTOCHROME C1 PUTATIVE |
AT5G40810 | PredictedSynthetic Lethality | FSW = 0.0251
| Unknown | CYTOCHROME C1 PUTATIVE |
AT2G01690 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0309
| Unknown | BINDING |
AT4G12610 | PredictedSynthetic Lethality | FSW = 0.0749
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT3G63490 | PredictedSynthetic Lethality | FSW = 0.0020
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0447
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT4G35800 | PredictedReconstituted ComplexProtein-peptideAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G38740 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0529
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16600 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0392
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G06680 | PredictedSynthetic Lethality | FSW = 0.0184
| Unknown | SPC98 (SPINDLE POLE BODY COMPONENT 98) TUBULIN BINDING |
AT2G14120 | PredictedSynthetic Lethality | FSW = 0.0096
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT1G11890 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.2073
| Unknown | SEC22 TRANSPORTER |
AT3G21720 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | ICL (ISOCITRATE LYASE) CATALYTIC/ ISOCITRATE LYASE |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0378
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G63810 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0034
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT1G17590 | PredictedSynthetic Lethality | FSW = 0.0130
| Unknown | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
AT2G38810 | Predictedinteraction prediction | FSW = 0.0744
| Unknown | HTA8 (HISTONE H2A 8) DNA BINDING |
AT3G12810 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.3247
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G16980 | PredictedAffinity Capture-MS | FSW = 0.1983
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.1264
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0517
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT5G64630 | PredictedPhenotypic Enhancement | FSW = 0.0539
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.0848
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G09920 | PredictedAffinity Capture-MS | FSW = 0.1687
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT4G17020 | PredictedPhenotypic Enhancement | FSW = 0.0577
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G10710 | PredictedSynthetic Rescue | FSW = 0.1007
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT3G23620 | PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.1295
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT2G47620 | PredictedPhenotypic Enhancement | FSW = 0.0633
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.1045
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G13370 | Predictedsynthetic growth defect | FSW = 0.2154
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G15430 | PredictedAffinity Capture-WesternAffinity Capture-MSPhenotypic Enhancement | FSW = 0.2068
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G34720 | PredictedSynthetic Lethality | FSW = 0.0092
| Unknown | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT2G36740 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3415
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G05055 | PredictedPhenotypic Enhancement | FSW = 0.0855
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.3309
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT1G55750 | PredictedSynthetic Lethality | FSW = 0.0418
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT2G06210 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0952
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G44950 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1926
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G17910 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0318
| Unknown | SURF1 (SURFEIT 1) |
AT1G02410 | PredictedSynthetic Lethality | FSW = 0.0117
| Unknown | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN CTAG / COX11 FAMILY |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.2098
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G24350 | PredictedSynthetic Lethality | FSW = 0.0104
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT2G14610 | Predictedtwo hybrid | FSW = 0.0037
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT5G59180 | PredictedAffinity Capture-MS | FSW = 0.1447
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT3G52090 | PredictedAffinity Capture-MS | FSW = 0.1446
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G28730 | PredictedSynthetic Rescue | FSW = 0.0474
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT5G19910 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2244
| Unknown | SOH1 FAMILY PROTEIN |
AT4G21710 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.1007
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G15400 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1572
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G36200 | Predictedsynthetic growth defect | FSW = 0.0964
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G04950 | PredictedPhenotypic Enhancement | FSW = 0.0976
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G08780 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1639
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G51310 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0988
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G52740 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.3257
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54250 | PredictedAffinity Capture-MS | FSW = 0.1197
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT1G55300 | PredictedSynthetic Lethality | FSW = 0.0271
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G61040 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.2111
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G65660 | PredictedSynthetic Lethality | FSW = 0.0044
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.1374
| Unknown | SGA2 |
AT1G77720 | PredictedSynthetic Lethality | FSW = 0.0080
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G79730 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.1289
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G21250 | PredictedSynthetic Lethality | FSW = 0.0013
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT1G32130 | PredictedPhenotypic Enhancement | FSW = 0.1358
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G54140 | PredictedPhenotypic Enhancement | FSW = 0.1534
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0981
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.1401
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.1058
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G22590 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementSynthetic RescueCo-expression | FSW = 0.2301
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G33100 | PredictedPhenotypic Enhancement | FSW = 0.0923
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT5G09740 | PredictedSynthetic Lethality | FSW = 0.1082
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10390 | PredictedColocalization | FSW = 0.0909
| Unknown | HISTONE H3 |
AT5G10400 | PredictedColocalization | FSW = 0.1188
| Unknown | HISTONE H3 |
AT5G10790 | PredictedPhenotypic Suppression | FSW = 0.2370
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1368
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G22010 | PredictedPhenotypic Enhancement | FSW = 0.0374
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G27970 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1012
| Unknown | BINDING |
AT5G45600 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2168
| Unknown | GAS41 PROTEIN BINDING |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.1081
| Unknown | CYCLIN FAMILY PROTEIN |
AT2G44580 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.1690
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G04710 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.0724
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G09100 | PredictedSynthetic Lethality | FSW = 0.0259
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.0688
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G21060 | Predictedsynthetic growth defect | FSW = 0.2369
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22320 | PredictedAffinity Capture-MS | FSW = 0.0808
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G22480 | PredictedPhenotypic Enhancement | FSW = 0.1678
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G11920 | PredictedSynthetic Lethality | FSW = 0.0412
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G22140 | PredictedPhenotypic Enhancement | FSW = 0.0985
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G09230 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0894
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G19150 | PredictedSynthetic Lethality | FSW = 0.0031
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G23290 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.1464
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G41010 | PredictedAffinity Capture-MS | FSW = 0.0874
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0845
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G41880 | PredictedPhenotypic Suppression | FSW = 0.0964
| Unknown | POLA3 DNA PRIMASE |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.1536
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G54750 | PredictedSynthetic Lethality | FSW = 0.0123
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
AT5G61150 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2661
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G63610 | PredictedSynthetic Lethality | FSW = 0.0887
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G67320 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.2041
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0269
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G15780 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.2005
| Unknown | UNKNOWN PROTEIN |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.0328
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT3G49660 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethalityinteraction prediction | FSW = 0.1030
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G55255 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0616
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.0968
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G08910 | PredictedSynthetic Lethality | FSW = 0.0112
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT1G48510 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0447
| Unknown | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN SURFEIT-RELATED |
AT2G18000 | PredictedSynthetic Lethality | FSW = 0.2305
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT2G42710 | PredictedSynthetic Lethality | FSW = 0.0156
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT5G01720 | Predictedinteraction prediction | FSW = 0.0412
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454