Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44530 - ( ribose-phosphate pyrophosphokinase putative / phosphoribosyl diphosphate synthetase putative )
22 Proteins interacs with AT2G44530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | Predictedinterologs mapping | FSW = 0.0231
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0135
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G19830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0564
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0235
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G03650 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT4G37640 | PredictedSynthetic Rescue | FSW = 0.0602
| Unknown | ACA2 (CALCIUM ATPASE 2) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT1G20110 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | ZINC FINGER (FYVE TYPE) FAMILY PROTEIN |
AT5G06550 | Predictedtwo hybrid | FSW = 0.0803
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN CELL SURFACE RECEPTOR LINKED SIGNAL TRANSDUCTION EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) TRANSCRIPTION FACTOR JUMONJI/ASPARTYL BETA-HYDROXYLASE (INTERPROIPR003347) TRANSCRIPTION FACTOR JUMONJI (INTERPROIPR013129) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSFERASE TRANSFERRING GLYCOSYL GROUPS (TAIRAT1G782801) HAS 1299 BLAST HITS TO 1289 PROTEINS IN 204 SPECIES ARCHAE - 0 BACTERIA - 195 METAZOA - 777 FUNGI - 106 PLANTS - 94 VIRUSES - 0 OTHER EUKARYOTES - 127 (SOURCE NCBI BLINK) |
AT4G18880 | Predictedinterologs mapping | FSW = 0.0152
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT3G14600 | Predictedtwo hybrid | FSW = 0.0692
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AC) |
AT5G56710 | Predictedtwo hybrid | FSW = 0.0084
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT4G10790 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | UBX DOMAIN-CONTAINING PROTEIN |
AT5G04800 | Predictedtwo hybrid | FSW = 0.0279
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G46720 | Predictedtwo hybrid | FSW = 0.0315
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S BUTIROSIN BIOSYNTHESIS BTRG-LIKE (INTERPROIPR013024) AIG2-LIKE (INTERPROIPR009288) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G029101) HAS 249 BLAST HITS TO 249 PROTEINS IN 85 SPECIES ARCHAE - 5 BACTERIA - 65 METAZOA - 121 FUNGI - 0 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 17 (SOURCE NCBI BLINK) |
AT2G03600 | PredictedAffinity Capture-MS | FSW = 0.0914
| Unknown | ATUPS3 (ARABIDOPSIS THALIANA UREIDE PERMEASE 3) |
AT4G02690 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | GLUTAMATE BINDING |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT2G40010 | Predictedinterologs mapping | FSW = 0.0231
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT2G31020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0461
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G58830 | PredictedPhenotypic Enhancement | FSW = 0.0246
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT2G35390 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0294
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT1G32380 | PredictedPhylogenetic profile method | FSW = 0.0564
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454