Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44690 - ( ARAC9 GTP binding )
32 Proteins interacs with AT2G44690| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G62880
   | Experimental | FSW = 0.1455
| Class A:plasma membraneClass B:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | ARAC10 GTP BINDING |
| AT1G20090
| Experimental | FSW = 0.1467
| Class A:plasma membraneClass B:cytoskeletonClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
| AT4G35950
| Experimental | FSW = 0.3674
| Class A:plasma membraneClass D:plastid (p = 0.78)cytosol (p = 0.67) | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
| AT2G38440
| Experimental | FSW = 0.1846
| Class A:plasma membrane | SCAR2 (SCAR HOMOLOG 2) |
| AT4G02640
| Experimental | FSW = 0.0229
| Class B:plasma membranenucleuscytosol | BZO2H1 DNA BINDING / PROTEIN HETERODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G34150
| Experimental | FSW = 0.1393
| Unknown | WAVE1 ACTIN MONOMER BINDING |
| AT1G29170
| Experimental | FSW = 0.0910
| Unknown | WAVE2 |
| AT4G18600
| Experimental | FSW = 0.0762
| Unknown | WAVE5 PROTEIN BINDING |
| AT2G17360
| PredictedSynthetic Lethality | FSW = 0.0215
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT1G45145
| PredictedAffinity Capture-WesternReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-Westerntwo hybrid | FSW = 0.1156
| Class C:plasma membrane | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
| AT1G75840
| PredictedSynthetic LethalityPhylogenetic profile methodCo-expression | FSW = 0.1910
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT4G28950
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1620
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
| AT3G55810
| PredictedAffinity Capture-MS | FSW = 0.0189
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
| AT5G45970
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1641
| Class C:plasma membrane | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
| AT4G35020
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1279
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
| AT3G48040
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3667
| Class C:plasma membrane | ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE |
| AT3G46900
| Predictedtwo hybrid | FSW = 0.0132
| Class C:plasma membrane | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT3G51300
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1642
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
| AT4G13090
| PredictedReconstituted Complextwo hybridsynthetic growth defect | FSW = 0.2042
| Unknown | XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE |
| AT2G17800
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1486
| Unknown | ARAC1 GTP BINDING |
| AT2G05170
| PredictedSynthetic Lethality | FSW = 0.0261
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
| AT3G03950
| Predictedtwo hybrid | FSW = 0.0370
| Unknown | PROTEIN BINDING |
| AT2G29540
| PredictedSynthetic Rescue | FSW = 0.0266
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G47830
| PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0405
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
| AT1G66590
| PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0643
| Unknown | COX19 FAMILY PROTEIN |
| AT2G31020
| PredictedReconstituted ComplexReconstituted Complextwo hybridAffinity Capture-WesternCo-crystal Structure | FSW = 0.0429
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT3G18850
| PredictedSynthetic Lethality | FSW = 0.0291
| Unknown | LPAT5 ACYLTRANSFERASE |
| AT4G25950
| Predictedinterologs mapping | FSW = 0.0143
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G29580
| Predictedtwo hybrid | FSW = 0.0559
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
| AT5G01770
| Predictedtwo hybridinterologs mapping | FSW = 0.0529
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
| AT5G19150
| PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G26250
| PredictedPhenotypic Enhancement | FSW = 0.0222
| Unknown | SUGAR TRANSPORTER PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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