Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44820 - ( unknown protein )
28 Proteins interacs with AT2G44820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G72730 | PredictedPhenotypic Suppression | FSW = 0.0168
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G08710 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0152
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G11260 | Predictedinterologs mappingReconstituted Complexinterologs mapping | FSW = 0.0403
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0626
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G55810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0535
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G45970 | PredictedProtein-RNA | FSW = 0.0163
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT3G16780 | PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
AT5G56290 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT1G70580 | PredictedAffinity Capture-MSReconstituted ComplexReconstituted ComplexAffinity Capture-WesternSynthetic Lethality | FSW = 0.0778
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT2G07687 | Predictedinterologs mapping | FSW = 0.0938
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 3 |
AT3G51300 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT1G02100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1563
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G34460 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0893
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0893
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0232
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0243
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G12670 | Predictedinterologs mapping | FSW = 0.0722
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.1055
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G49420 | Predictedinterologs mapping | FSW = 0.0808
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT4G10480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0606
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0482
| Unknown | UNKNOWN PROTEIN |
AT4G20870 | PredictedAffinity Capture-MS | FSW = 0.0718
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0564
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G25150 | PredictedAffinity Capture-MS | FSW = 0.0606
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0050
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454