Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45170 - ( AtATG8e microtubule binding )
36 Proteins interacs with AT2G45170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16520 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1957
| Class C:vacuolecytosolcytoskeleton | ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING |
AT4G21980 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1837
| Class C:vacuolecytosolcytoskeleton | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G06420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3913
| Class C:vacuolecytoskeleton | ATG8H (AUTOPHAGY 8H) MICROTUBULE BINDING |
AT3G15580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3522
| Class C:vacuolecytoskeleton | APG8H (AUTOPHAGY 8H) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE/ MICROTUBULE BINDING |
AT2G05630 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1957
| Class C:vacuolecytoskeleton | AUTOPHAGY 8D (APG8D) |
AT3G60640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3404
| Class C:vacuolecytoskeleton | ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING |
AT1G62040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2817
| Class C:vacuolecytoskeleton | ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING |
AT4G04620 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3522
| Class C:vacuolecytoskeleton | ATG8B (AUTOPHAGY 8B) MICROTUBULE BINDING |
AT3G09630 | PredictedPhenotypic Enhancement | FSW = 0.0217
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.1352
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1025
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.0949
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
ATCG00160 | PredictedPhenotypic Suppression | FSW = 0.0079
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT4G14350 | PredictedPhenotypic Suppression | FSW = 0.0465
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G53960 | Predictedsynthetic growth defect | FSW = 0.0496
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G07180 | PredictedCo-purificationCo-purificationCo-purificationCo-purificationtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridCo-purificationco-fractionationCo-fractionationinterologs mapping | FSW = 0.0813
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT2G36170 | PredictedAffinity Capture-Western | FSW = 0.0332
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.1488
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.1379
| Unknown | ARA6 GTP BINDING / GTPASE |
AT4G39200 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1124
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0681
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G66240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1185
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.0840
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1075
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.1977
| Unknown | UNKNOWN PROTEIN |
AT3G45240 | PredictedPhenotypic Enhancement | FSW = 0.1025
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47290 | PredictedPhenotypic Suppression | FSW = 0.0968
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT5G13860 | PredictedPhenotypic Suppression | FSW = 0.0530
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.1005
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G49970 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1396
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G65980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexReconstituted Complextwo hybridAffinity Capture-WesternAffinity Capture-MSSynthetic Rescue | FSW = 0.2072
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
AT3G18850 | PredictedSynthetic Rescue | FSW = 0.0441
| Unknown | LPAT5 ACYLTRANSFERASE |
AT5G16980 | PredictedAffinity Capture-MS | FSW = 0.0934
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454