Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45490 - ( AtAUR3 (ATAURORA3) ATP binding / histone kinase(H3-S10 specific) / protein kinase )
47 Proteins interacs with AT2G45490| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G48750
   | Predictedbiochemicalinteraction prediction | FSW = 0.0296
| Class C:nucleuscytosol | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT4G32830
| PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0699
| Class C:nucleuscytosol | ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G25880
| PredictedShared biological functionGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3571
| Class C:nucleuscytosol | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
| AT1G61000
| PredictedPhenotypic Suppression | FSW = 0.0235
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
| AT1G07940 | Predictedbiochemical | FSW = 0.0062
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G11964 | Predictedbiochemical | FSW = 0.0166
| Class C:nucleus | RNA BINDING |
| AT5G67270
| Predictedtwo hybrid | FSW = 0.0226
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
| AT4G30860
| PredictedSynthetic Rescue | FSW = 0.0860
| Class C:nucleus | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0188
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G57150
| PredictedAffinity Capture-MS | FSW = 0.0205
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT4G25340
| Predictedbiochemical | FSW = 0.0170
| Class C:nucleus | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| AT2G17640
| Predictedbiochemical | FSW = 0.0457
| Class C:cytosol | ATSERAT31 ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
| AT3G48990
| Predictedbiochemical | FSW = 0.0196
| Unknown | AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN |
| AT1G50200
| Predictedbiochemical | FSW = 0.0320
| Unknown | ALATS (ALANYL-TRNA SYNTHETASE) ATP BINDING / ALANINE-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G24360
| Predictedbiochemical | FSW = 0.0267
| Unknown | 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE |
| AT5G53480
| PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | IMPORTIN BETA-2 PUTATIVE |
| AT2G30110
| PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
| AT4G26110
| Predictedbiochemical | FSW = 0.0356
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
| AT5G41970
| PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METAL-DEPENDENT PROTEIN HYDROLASE (INTERPROIPR003226) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G493201) HAS 464 BLAST HITS TO 461 PROTEINS IN 209 SPECIES ARCHAE - 0 BACTERIA - 122 METAZOA - 131 FUNGI - 87 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 95 (SOURCE NCBI BLINK) |
| AT4G31180
| Predictedbiochemical | FSW = 0.0128
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
| AT5G45550
| PredictedColocalization | FSW = 0.0684
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
| AT2G36200
| Predictedinteraction prediction | FSW = 0.0748
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT1G04130
| Predictedbiochemical | FSW = 0.0307
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
| AT1G17690
| Predictedbiochemical | FSW = 0.0320
| Unknown | UNKNOWN PROTEIN |
| AT1G34150
| Predictedbiochemical | FSW = 0.0063
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
| AT1G54390
| Predictedbiochemical | FSW = 0.0277
| Unknown | PHD FINGER PROTEIN-RELATED |
| AT2G20560
| Predictedbiochemical | FSW = 0.0094
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
| AT2G31305
| Predictedinterologs mapping | FSW = 0.0947
| Unknown | INH3 (INHIBITOR-3) |
| AT2G33560
| Predictedbiochemical | FSW = 0.0256
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
| AT2G39840
| PredictedSynthetic Rescueinterologs mappingSynthetic Rescueinteraction prediction | FSW = 0.0651
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G07270
| PredictedPhenotypic Enhancement | FSW = 0.0189
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
| AT1G77720
| PredictedPhenotypic Suppression | FSW = 0.0635
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT2G18290
| Predictedinterologs mapping | FSW = 0.0650
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
| AT2G37420
| Predictedsynthetic growth defect | FSW = 0.0109
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT3G02320
| Predictedbiochemical | FSW = 0.0091
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
| AT3G52390
| Predictedbiochemical | FSW = 0.0027
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G53570
| Predictedtwo hybrid | FSW = 0.0152
| Unknown | AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G62940
| Predictedbiochemical | FSW = 0.0193
| Unknown | OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN |
| AT4G31120
| Predictedtwo hybrid | FSW = 0.0492
| Unknown | SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE |
| AT5G10400 | Predictedbiochemicalbiochemical | FSW = 0.0143
| Unknown | HISTONE H3 |
| AT5G17570
| Predictedbiochemical | FSW = 0.0193
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT5G19680
| Predictedinterologs mappingSynthetic Rescueinterologs mapping | FSW = 0.0741
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
| AT5G52200
| Predictedinterologs mappinginterologs mappingSynthetic Rescue | FSW = 0.0186
| Unknown | UNKNOWN PROTEIN |
| AT5G52820
| Predictedbiochemical | FSW = 0.0082
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
| AT5G65900
| Predictedbiochemical | FSW = 0.0126
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G50230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0950
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G04530
| PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1715
| Unknown | PPCK2 KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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