Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45660 - ( AGL20 (AGAMOUS-LIKE 20) transcription factor )

28 Proteins interacs with AT2G45660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G71692

Experimental

two hybrid

FSW = 0.4060

Class D:

mitochondrion (p = 0.82)

AGL12 (AGAMOUS-LIKE 12) TRANSCRIPTION FACTOR
AT5G13790

Experimental

two hybrid

FSW = 0.4033

Class D:

nucleus (p = 0.78)

AGL15 (AGAMOUS-LIKE 15) DNA BINDING / TRANSCRIPTION FACTOR
AT2G18040

Experimental

pull down

interaction detection method

FSW = 0.0194

Class D:

mitochondrion (p = 0.82)

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G16970

Experimental

FSW = 0.0076

Class D:

nucleus (p = 0.78)

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT1G69120

Experimental

two hybrid

two hybrid

FSW = 0.4120

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT4G24540

Experimental

two hybrid

FSW = 0.5682

Class D:

nucleus (p = 0.78)

AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT5G51870

Experimental

two hybrid

FSW = 0.1961

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL71 (AGAMOUS-LIKE 71) TRANSCRIPTION FACTOR
AT3G57230

Experimental

two hybrid

FSW = 0.6725

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL16 (AGAMOUS-LIKE 16) TRANSCRIPTION FACTOR
AT1G60920

Experimental

FSW = 0.1023

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL55 (AGAMOUS-LIKE 55) DNA BINDING / TRANSCRIPTION FACTOR
AT4G11250

Experimental

FSW = 0.0704

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL52 TRANSCRIPTION FACTOR
AT3G54220

Experimental

FSW = 0.0592

Class D:

nucleus (p = 0.78)

SCR (SCARECROW) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G24260

Experimental

two hybrid

FSW = 0.4132

Class D:

nucleus (p = 0.78)

SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G26310

Experimental

two hybrid

two hybrid

FSW = 0.2593

Class D:

nucleus (p = 0.78)

CAL (CAULIFLOWER) DNA BINDING / TRANSCRIPTION FACTOR
AT5G15800

Experimental

two hybrid

FSW = 0.5525

Class D:

nucleus (p = 0.78)

SEP1 (SEPALLATA1) DNA BINDING / TRANSCRIPTION FACTOR
AT3G02310

Experimental

two hybrid

FSW = 0.2571

Class D:

nucleus (p = 0.78)

SEP2 (SEPALLATA 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G03710

Experimental

two hybrid

FSW = 0.1469

Class D:

nucleus (p = 0.78)

SEP4 (SEPALLATA 4) DNA BINDING / TRANSCRIPTION FACTOR
AT2G42830

Experimental

two hybrid

FSW = 0.4274

Class D:

nucleus (p = 0.78)

SHP2 (SHATTERPROOF 2) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G37940

Experimental

two hybrid

FSW = 0.6047

Unknown

AGL21 TRANSCRIPTION FACTOR
AT3G61120

Experimental

two hybrid

FSW = 0.2262

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL13 (AGAMOUS-LIKE 13) DNA BINDING / TRANSCRIPTION FACTOR
AT4G11880

Experimental

two hybrid

FSW = 0.6198

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL14 (AGAMOUS-LIKE 14) DNA BINDING / TRANSCRIPTION FACTOR
AT5G60910

Experimental

two hybrid

FSW = 0.4274

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL8 (AGAMOUS-LIKE 8) TRANSCRIPTION FACTOR
AT4G22950

Experimental

two hybrid

FSW = 0.1875

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AGL19 (AGAMOUS-LIKE 19) TRANSCRIPTION FACTOR
AT2G22630

Experimental

two hybrid

FSW = 0.3403

Class D:

nucleus (p = 0.78)

AGL17 (AGAMOUS-LIKE 17) TRANSCRIPTION FACTOR
AT2G22540

Experimental

two hybrid

FSW = 0.4545

Class D:

nucleus (p = 0.78)

SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING
AT3G58780

Experimental

two hybrid

FSW = 0.5994

Class D:

nucleus (p = 0.78)

SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G45650

Experimental

two hybrid

FSW = 0.5372

Class D:

nucleus (p = 0.78)

AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT5G62165

Experimental

two hybrid

FSW = 0.4459

Unknown

AGL42 (AGAMOUS LIKE 42) TRANSCRIPTION FACTOR
AT2G14210

Experimental

two hybrid

FSW = 0.2424

Unknown

AGL44 (AGAMOUS-LIKE 44) DNA BINDING / TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454