Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  


AtPIN will be upgraded. Please send your suggestions here

AT2G45695 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown CONTAINS InterPro DOMAIN/s Ubiquitin related modifier 1 (InterProIPR015221) Ubiquitin-related modifier 1 (InterProIPR017188) Molybdopterin synthase/thiamin biosynthesis sulphur carrier beta-grasp (InterProIPR016155) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT3G611131) Has 238 Blast hits to 238 proteins in 125 species Archae - 0 Bacteria - 0 Metazoa - 93 Fungi - 72 Plants - 18 Viruses - 0 Other Eukaryotes - 55 (source NCBI BLink) )

7 Proteins interacs with AT2G45695
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G30860

Predicted

Phenotypic Enhancement

FSW = 0.0381

Unknown

 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE
AT1G04160

Predicted

Synthetic Lethality

FSW = 0.0308

Unknown

 XIB (MYOSIN XI B) MOTOR
AT1G29990

Predicted

Synthetic Lethality

FSW = 0.0342

Unknown

 PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G65970

Predicted

Affinity Capture-Western

FSW = 0.0556

Unknown

 TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE
AT5G23290

Predicted

Synthetic Lethality

FSW = 0.0553

Unknown

 PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G49510

Predicted

Synthetic Lethality

FSW = 0.0549

Unknown

 PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G55130

Predicted

two hybrid

biochemical

two hybrid

FSW = 0.2449

Unknown

 CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMP

TAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71

         

This page takes 0.143 seconds to be build.