Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45730 - ( eukaryotic initiation factor 3 gamma subunit family protein )

10 Proteins interacs with AT2G45730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G25780

Predicted

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

interaction prediction

FSW = 0.1283

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT3G10330

Predicted

interaction prediction

FSW = 0.0880

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT2G41630

Predicted

two hybrid

FSW = 0.0711

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT5G14600

Predicted

two hybrid

two hybrid

interologs mapping

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Affinity Capture-MS

two hybrid

co-fractionation

Co-fractionation

interologs mapping

interaction prediction

Co-expression

FSW = 0.4635

Unknown

TRNA (ADENINE-N1-)-METHYLTRANSFERASE
AT1G54290

Predicted

Affinity Capture-Western

FSW = 0.0424

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G53880Predicted

Phenotypic Suppression

FSW = 0.0790

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT2G46280

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.1160

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G59410

Predicted

Phenotypic Suppression

FSW = 0.0300

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G32720

Predicted

interologs mapping

FSW = 0.0714

Unknown

ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT1G79880

Predicted

interologs mapping

FSW = 0.0933

Unknown

LA DOMAIN-CONTAINING PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454