Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45790 - ( PMM (PHOSPHOMANNOMUTASE) phosphomannomutase )
24 Proteins interacs with AT2G45790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0149
| Class D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0596
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G64790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0638
| Unknown | BINDING |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.1095
| Unknown | DNA HELICASE PUTATIVE |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.1094
| Unknown | DNA HELICASE-RELATED |
AT4G34460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0169
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G07670 | Predictedinterologs mapping | FSW = 0.0130
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0538
| Unknown | PYRUVATE KINASE PUTATIVE |
AT2G40360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0067
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G54840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0117
| Unknown | SGP1 GTP BINDING |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0253
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | SGP2 GTP BINDING |
AT2G18760 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0181
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G10260 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT1G15420 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0204
| Unknown | UNKNOWN PROTEIN |
AT4G25120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0099
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0062
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G07760 | Predictedinterologs mapping | FSW = 0.0584
| Unknown | FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0273
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT5G21170 | Predictedinteraction prediction | FSW = 0.0268
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454