Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46070 - ( MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP kinase/ kinase )
76 Proteins interacs with AT2G46070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G04550 | Experimentalphosphatase assaypull downtwo hybridbiochemicalin vitro | FSW = 0.0131
| Unknown | IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT1G73500 | Experimentalprotein kinase assay | FSW = 0.0923
| Unknown | MKK9 (MAP KINASE KINASE 9) MAP KINASE KINASE/ KINASE/ PROTEIN KINASE ACTIVATOR |
AT5G56580 | Experimentalprotein kinase assay | FSW = 0.0837
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT1G18350 | Experimentalprotein kinase assay | FSW = 0.1084
| Unknown | ATMKK7 MAP KINASE KINASE/ KINASE |
AT4G26070 | Experimentalprotein kinase assay | FSW = 0.0913
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT1G72770 | Experimental | FSW = 0.0096
| Unknown | HAB1 (HOMOLOGY TO ABI1) CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G23720 | Experimental | FSW = 0.0126
| Unknown | PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT3G16480 | PredictedAffinity Capture-Western | FSW = 0.0686
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT4G27090 | PredictedAffinity Capture-Western | FSW = 0.0315
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT2G36530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2950
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT1G76040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3953
| Unknown | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G34480 | Predictedco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.1486
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G31780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1715
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G07090 | PredictedReconstituted Complex | FSW = 0.0833
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT1G14320 | PredictedAffinity Capture-Western | FSW = 0.0294
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G01370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1051
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G07890 | PredictedAffinity Capture-Western | FSW = 0.0197
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT2G44350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3282
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT2G30390 | PredictedAffinity Capture-Western | FSW = 0.0920
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
AT3G23940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4054
| Unknown | DEHYDRATASE FAMILY |
AT1G10070 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0820
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G73230 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2684
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT1G06390 | PredictedPhylogenetic profile method | FSW = 0.1881
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT2G32670 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | ATVAMP725 |
AT4G18710 | PredictedPhylogenetic profile method | FSW = 0.2267
| Unknown | BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE |
AT4G34430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationco-fractionationCo-fractionation | FSW = 0.2404
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G52250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2032
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G43810 | PredictedAffinity Capture-Western | FSW = 0.0120
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G18040 | PredictedPhylogenetic profile method | FSW = 0.0688
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT2G40290 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.2842
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G36590 | PredictedAffinity Capture-MS | FSW = 0.2813
| Unknown | MADS-BOX PROTEIN (AGL40) |
AT4G39160 | PredictedAffinity Capture-Western | FSW = 0.0369
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G21190 | PredictedAffinity Capture-Western | FSW = 0.0628
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G02730 | PredictedAffinity Capture-MS | FSW = 0.0751
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G05660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic Lethality | FSW = 0.3750
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G05785 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0259
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G25260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2117
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G27320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2781
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G29970 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G55060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0395
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G56090 | PredictedAffinity Capture-Western | FSW = 0.0376
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G72340 | PredictedAffinity Capture-Western | FSW = 0.0571
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT2G14880 | PredictedAffinity Capture-Western | FSW = 0.0591
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G27170 | PredictedAffinity Capture-Western | FSW = 0.0315
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G34980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2304
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT1G10210 | PredictedAffinity Capture-WesternPhylogenetic profile methodCo-expression | FSW = 0.1601
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G10600 | PredictedAffinity Capture-MS | FSW = 0.1798
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.1245
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.1077
| Unknown | UNKNOWN PROTEIN |
AT2G14560 | PredictedAffinity Capture-MS | FSW = 0.0494
| Unknown | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | HISTONE H2B PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0266
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G18660 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2249
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G59410 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0056
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G01640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3679
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
AT5G13010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3319
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G13700 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1256
| Unknown | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) FAD BINDING / POLYAMINE OXIDASE |
AT5G25030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4408
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT5G26250 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purificationAffinity Capture-MS | FSW = 0.2328
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G37830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purificationReconstituted Complex | FSW = 0.3869
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
AT5G44830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2004
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G59850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3409
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
AT3G06483 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G16840 | PredictedAffinity Capture-Western | FSW = 0.0218
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT4G24160 | PredictedReconstituted Complex | FSW = 0.0347
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT4G36450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2877
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT3G45640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2561
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G07880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2142
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT3G59790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2089
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT2G43790 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1567
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT2G18170 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2446
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT1G59580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1287
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT5G26751 | PredictedPhylogenetic profile method | FSW = 0.1812
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G05840 | PredictedPhylogenetic profile method | FSW = 0.2328
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G12610 | PredictedGene fusion method | FSW = 0.0145
| Unknown | DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100) NUCLEOTIDE BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454