Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  


AtPIN will be upgraded. Please send your suggestions here

AT2G46110 - ( KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-methyl-2-oxobutanoate hydroxymethyltransferase )

11 Proteins interacs with AT2G46110
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G61530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2500

Class C:

mitochondrion

 PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT5G65720

Predicted

pull down

FSW = 0.0519

Class C:

mitochondrion

 NFS1 ATP BINDING / CYSTEINE DESULFURASE/ TRANSAMINASE
AT3G27740

Predicted

pull down

FSW = 0.0618

Unknown

 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) CARBAMOYL-PHOSPHATE SYNTHASE (GLUTAMINE-HYDROLYZING)/ CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT5G49030

Predicted

pull down

FSW = 0.0286

Unknown

 OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT5G53480

Predicted

two hybrid

FSW = 0.0282

Unknown

 IMPORTIN BETA-2 PUTATIVE
ATCG00380Predicted

pull down

FSW = 0.0161

Unknown

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
AT3G21700

Predicted

two hybrid

FSW = 0.0150

Unknown

 SGP2 GTP BINDING
AT3G16980

Predicted

two hybrid

FSW = 0.0343

Unknown

 NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G48840

Predicted

pull down

FSW = 0.0556

Unknown

 PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) PANTOATE-BETA-ALANINE LIGASE/ PROTEIN HOMODIMERIZATION
AT3G07300

Predicted

two hybrid

FSW = 0.0533

Unknown

 EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT1G02690

Predicted

two hybrid

FSW = 0.0191

Unknown

 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMP

TAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71

         

This page takes 0.221 seconds to be build.