Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46290 - ( eukaryotic translation initiation factor 3 subunit 2 putative / eIF-3 beta putative / eIF3i putative )
16 Proteins interacs with AT2G46290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Predictedinterologs mapping | FSW = 0.0134
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G11400 | PredictedAffinity Capture-Western | FSW = 0.1057
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT2G20580 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0399
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G10430 | Predictedtwo hybridtwo hybrid | FSW = 0.0136
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G11420 | PredictedAffinity Capture-MSCo-purificationin vivo | FSW = 0.1047
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT2G20140 | PredictedColocalization | FSW = 0.0663
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT3G57290 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3200
| Unknown | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
AT2G36010 | Predictedtwo hybridtwo hybrid | FSW = 0.0500
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | ZINC ION BINDING |
AT3G61890 | Predictedtwo hybrid | FSW = 0.0468
| Unknown | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G01320 | Predictedtwo hybrid | FSW = 0.0366
| Unknown | SNL1 (SIN3-LIKE 1) |
AT4G27490 | Predictedtwo hybrid | FSW = 0.1059
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT3G02200 | PredictedAffinity Capture-MS | FSW = 0.1604
| Unknown | PROTEASOME FAMILY PROTEIN |
AT4G20980 | PredictedAffinity Capture-Western | FSW = 0.1451
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
AT1G24190 | Predictedtwo hybrid | FSW = 0.0337
| Unknown | SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR |
AT2G46280 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0858
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454