Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46290 - ( eukaryotic translation initiation factor 3 subunit 2 putative / eIF-3 beta putative / eIF3i putative )

16 Proteins interacs with AT2G46290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48750

Predicted

interologs mapping

FSW = 0.0134

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G11400

Predicted

Affinity Capture-Western

FSW = 0.1057

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT2G20580

Predicted

Affinity Capture-Western

interologs mapping

FSW = 0.0399

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G10430

Predicted

two hybrid

two hybrid

FSW = 0.0136

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G11420

Predicted

Affinity Capture-MS

Co-purification

in vivo

FSW = 0.1047

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT2G20140

Predicted

Colocalization

FSW = 0.0663

Unknown

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT3G57290

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.3200

Unknown

EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR
AT2G36010

Predicted

two hybrid

two hybrid

FSW = 0.0500

Unknown

E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT2G19385

Predicted

Affinity Capture-MS

FSW = 0.0600

Unknown

ZINC ION BINDING
AT3G61890

Predicted

two hybrid

FSW = 0.0468

Unknown

ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT3G01320Predicted

two hybrid

FSW = 0.0366

Unknown

SNL1 (SIN3-LIKE 1)
AT4G27490

Predicted

two hybrid

FSW = 0.1059

Unknown

3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN
AT3G02200

Predicted

Affinity Capture-MS

FSW = 0.1604

Unknown

PROTEASOME FAMILY PROTEIN
AT4G20980

Predicted

Affinity Capture-Western

FSW = 0.1451

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE
AT1G24190

Predicted

two hybrid

FSW = 0.0337

Unknown

SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR
AT2G46280

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.0858

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454