Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46340 - ( SPA1 (SUPPRESSOR OF PHYA-105 1) protein binding / signal transducer )
24 Proteins interacs with AT2G46340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G32950 | Experimentalaffinity technologyin vitroco-fractionationCo-fractionationaffinity technologyaffinity technologyAffinity Capture-WesternAffinity Capture-WesternReconstituted Complexmolecular sievingconfocal microscopyco-fractionationCo-fractionationtwo hybridReconstituted ComplexAffinity Capture-MSin vitro | FSW = 0.2279
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G15850 | Experimentalconfocal microscopymolecular sieving | FSW = 0.2111
| Class A:nucleusClass D:nucleus (p = 0.78) | COL1 (CONSTANS-LIKE 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G11260 | Experimental | FSW = 0.0714
| Class A:nucleusClass D:nucleus (p = 0.78) | HY5 (ELONGATED HYPOCOTYL 5) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR |
AT5G15840 | ExperimentalReconstituted Complexfluorescence acceptor donor pairin vitro | FSW = 0.1290
| Class A:nucleusClass D:nucleus (p = 0.78) | CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT1G02340 | Experimentaltwo hybridReconstituted Complexin vitrocoimmunoprecipitation | FSW = 0.0714
| Class A:nucleusClass D:nucleus (p = 0.78) | HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G49760 | Experimentalprotein array | FSW = 0.0989
| Class B:vacuoleplasma membranenucleusClass D:nucleus (p = 0.78) | LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN |
AT3G56270 | Experimentalprotein array | FSW = 0.0593
| Class B:vacuolenucleusgolgiClass D:nucleus (p = 0.78) | UNKNOWN PROTEIN |
AT4G01900 | Experimental | FSW = 0.0296
| Class B:plastidnucleusClass D:nucleus (p = 0.78) | GLB1 (GLNB1 HOMOLOG) ACETYLGLUTAMATE KINASE REGULATOR |
AT3G28450 | Experimentalprotein array | FSW = 0.0228
| Class B:plasma membranenucleus | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT4G21100 | ExperimentalReconstituted ComplexAffinity Capture-Western | FSW = 0.2188
| Class B:nucleusextracellularClass D:nucleus (p = 0.78) | DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) DAMAGED DNA BINDING / PROTEIN BINDING |
AT4G05420 | ExperimentalReconstituted Complex | FSW = 0.1856
| Class D:nucleus (p = 0.78) | DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING |
AT3G15354 | Experimentalaffinity technologyin vitroAffinity Capture-WesternReconstituted Complexconfocal microscopyco-fractionationCo-fractionation | FSW = 0.3974
| Unknown | SPA3 (SPA1-RELATED 3) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT1G53090 | Experimentalaffinity technologyin vitroAffinity Capture-WesternReconstituted Complexconfocal microscopyco-fractionationCo-fractionation | FSW = 0.4765
| Unknown | SPA4 (SPA1-RELATED 4) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT5G21170 | Experimental | FSW = 0.0126
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT4G00180 | Experimentalpull down | FSW = 0.0988
| Unknown | YAB3 (YABBY3) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G20950 | Experimentalprotein array | FSW = 0.0658
| Unknown | PYROPHOSPHATE--FRUCTOSE-6-PHOSPHATE 1-PHOSPHOTRANSFERASE-RELATED / PYROPHOSPHATE-DEPENDENT 6-PHOSPHOFRUCTOSE-1-KINASE-RELATED |
AT4G23170 | Experimentalprotein array | FSW = 0.0593
| Unknown | EP1 PROTEIN KINASE |
AT5G10520 | Experimentalprotein array | FSW = 0.0423
| Unknown | RBK1 (ROP BINDING PROTEIN KINASES 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G74490 | Experimentalprotein array | FSW = 0.0988
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G56040 | Experimentalprotein array | FSW = 0.0918
| Unknown | LEUCINE-RICH REPEAT PROTEIN KINASE PUTATIVE |
AT4G11110 | Experimentalin vitroReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionationaffinity technologyco-fractionationCo-fractionation | FSW = 0.4318
| Unknown | SPA2 (SPA1-RELATED 2) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT5G22750 | PredictedGene fusion method | FSW = 0.0450
| Class C:nucleus | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G08590 | PredictedGene fusion method | FSW = 0.1109
| Unknown | CLAVATA1 RECEPTOR KINASE (CLV1) |
AT1G63300 | PredictedGene fusion method | FSW = 0.1078
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454