Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46470 - ( OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) )
17 Proteins interacs with AT2G46470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G27240 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1625
| Unknown | CYTOCHROME C1 PUTATIVE |
AT5G40810 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1322
| Unknown | CYTOCHROME C1 PUTATIVE |
AT1G07510 | Predictedinterologs mapping | FSW = 0.1039
| Unknown | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
AT2G29080 | Predictedinterologs mapping | FSW = 0.1003
| Unknown | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
AT5G13450 | PredictedAffinity Capture-Western | FSW = 0.0276
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT2G26140 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.2415
| Unknown | FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE |
AT5G12480 | Predictedbiochemical | FSW = 0.0081
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0248
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G07727 | PredictedAffinity Capture-Western | FSW = 0.0970
| Unknown | CYTOCHROME B (MTCYB) (COB) (CYTB) |
AT2G07741 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1429
| Unknown | ATPASE SUBUNIT 6 PUTATIVE |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0226
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G07687 | PredictedAffinity Capture-WesternAffinity Capture-Westerninteraction prediction | FSW = 0.1429
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 3 |
AT2G07671 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0571
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT1G17530 | PredictedReconstituted Complex | FSW = 0.0635
| Unknown | ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
ATMG00160 | PredictedAffinity Capture-WesternAffinity Capture-WesternSynthetic Rescue | FSW = 0.0832
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 2 |
ATMG01360 | PredictedAffinity Capture-Western | FSW = 0.1531
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 1 |
AT4G25970 | PredictedPhenotypic Enhancement | FSW = 0.0482
| Unknown | PSD3 (PHOSPHATIDYLSERINE DECARBOXYLASE 3) PHOSPHATIDYLSERINE DECARBOXYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454