Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46520 - ( cellular apoptosis susceptibility protein putative / importin-alpha re-exporter putative )
19 Proteins interacs with AT2G46520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G09200 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT5G20020 | Predictedin vitroEnriched domain pair | FSW = 0.0386
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G72370 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G04770 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G12250 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G08820 | Predictedinterologs mapping | FSW = 0.0220
| Unknown | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE |
AT3G06720 | PredictedAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-WesternSynthetic Lethalitysynthetic growth defectinterologs mappingReconstituted ComplexAffinity Capture-Westerntwo hybridCo-crystal Structureinteraction predictionEnriched domain pairCo-expression | FSW = 0.0416
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT4G02150 | Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.2637
| Unknown | MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER |
AT1G09270 | Predictedtwo hybridin vitro | FSW = 0.0602
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT3G59410 | Predictedtwo hybridtwo hybrid | FSW = 0.0052
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G49310 | Predictedtwo hybridin vitro | FSW = 0.1086
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G55190 | Predictedin vitro | FSW = 0.0452
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G03340 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0338
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT1G01960 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0370
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G02690 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-crystal Structureinterologs mappingReconstituted Complexsynthetic growth defectSynthetic Lethalitytwo hybridEnriched domain pairCo-expression | FSW = 0.0450
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454