Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46560 - ( transducin family protein / WD-40 repeat family protein )

12 Proteins interacs with AT2G46560
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G76030

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1684

Class C:

vacuole

VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT1G78900

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1717

Class C:

vacuole

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G58730

Predicted

Affinity Capture-Western

FSW = 0.2178

Class C:

vacuole

VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT4G02840

Predicted

two hybrid

FSW = 0.0248

Class C:

vacuole

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G12520

Predicted

synthetic growth defect

FSW = 0.0281

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT3G48750

Predicted

biochemical

FSW = 0.0166

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0105

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G11270

Predicted

Affinity Capture-Western

FSW = 0.0933

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G55060

Predicted

Affinity Capture-Western

FSW = 0.0896

Unknown

UNKNOWN PROTEIN
AT3G08560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3161

Unknown

VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0357

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G42190

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0521

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454