Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46800 - ( ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA) inorganic anion transmembrane transporter/ metal ion transmembrane transporter/ zinc ion transmembrane transporter )

7 Proteins interacs with AT2G46800
LocusMethodFSW Cellular Compartment Classification (C3)Description
YMR243CExperimental

interologs mapping

FSW = 0.0529

Unknown

ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA) INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
YOR316CExperimental

interologs mapping

FSW = 0.0529

Unknown

ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA) INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT1G55890

Predicted

Gene fusion method

FSW = 0.1025

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G50860

Predicted

in vitro

in vivo

FSW = 0.1270

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT3G55480

Predicted

in vitro

in vivo

FSW = 0.1309

Unknown

ADAPTIN FAMILY PROTEIN
AT1G48760

Predicted

in vitro

in vivo

Co-expression

FSW = 0.0711

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT3G61940

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1025

Unknown

MTPA1 EFFLUX TRANSMEMBRANE TRANSPORTER/ INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454