Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G47020 - ( peptide chain release factor putative )
16 Proteins interacs with AT2G47020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedpull down | FSW = 0.0098
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT4G37910 | Predictedpull down | FSW = 0.0233
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT5G12480 | Predictedbiochemical | FSW = 0.0085
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
ATMG00160 | PredictedSynthetic Rescue | FSW = 0.0863
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 2 |
ATMG01360 | PredictedSynthetic Rescue | FSW = 0.1000
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 1 |
AT5G59470 | Predictedtwo hybrid | FSW = 0.1498
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT5G36170 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2000
| Unknown | HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) TRANSLATION RELEASE FACTOR/ TRANSLATION RELEASE FACTOR CODON SPECIFIC |
AT4G07390 | Predictedtwo hybrid | FSW = 0.0775
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT5G64150 | Predictedtwo hybridtwo hybrid | FSW = 0.0775
| Unknown | METHYLASE FAMILY PROTEIN |
AT2G20060 | Predictedpull down | FSW = 0.0222
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT3G07630 | Predictedpull down | FSW = 0.0426
| Unknown | ADT2 (AROGENATE DEHYDRATASE 2) AROGENATE DEHYDRATASE/ PREPHENATE DEHYDRATASE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0110
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0101
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80670 | Predictedtwo hybridinteraction prediction | FSW = 0.0337
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G15770 | Predictedinteraction prediction | FSW = 0.0234
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
AT3G62910 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3788
| Unknown | APG3 (ALBINO AND PALE GREEN) TRANSLATION RELEASE FACTOR/ TRANSLATION RELEASE FACTOR CODON SPECIFIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454