Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G47160 - ( BOR1 (REQUIRES HIGH BORON 1) anion exchanger/ boron transporter )
46 Proteins interacs with AT2G47160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0177
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G73230 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0406
| Class C:plasma membrane | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT3G17390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1157
| Class C:plasma membrane | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.1236
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G11730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0232
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0159
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT3G56760 | PredictedAffinity Capture-MS | FSW = 0.0102
| Class C:plasma membrane | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT1G76810 | PredictedAffinity Capture-MS | FSW = 0.0224
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT1G31780 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G44170 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT5G26030 | PredictedSynthetic Rescue | FSW = 0.0300
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G07100 | PredictedAffinity Capture-MS | FSW = 0.0422
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT2G06850 | PredictedAffinity Capture-MS | FSW = 0.0962
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G43900 | PredictedSynthetic Rescue | FSW = 0.0350
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT4G09570 | PredictedAffinity Capture-MS | FSW = 0.0047
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G09360 | PredictedAffinity Capture-MS | FSW = 0.0445
| Unknown | RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G76300 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT2G23460 | PredictedAffinity Capture-MS | FSW = 0.0799
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT3G66656 | PredictedAffinity Capture-Western | FSW = 0.0465
| Unknown | AGL91 TRANSCRIPTION FACTOR |
AT2G28520 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | VHA-A1 (VACUOLAR PROTON ATPASE A 1) ATPASE |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G77990 | PredictedReconstituted Complex | FSW = 0.0605
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G10920 | PredictedSynthetic Lethality | FSW = 0.0747
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | PSF2 |
AT1G31170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0352
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G20635 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G34750 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G46710 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0632
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT2G16740 | PredictedColocalizationAffinity Capture-Western | FSW = 0.0388
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT5G13860 | PredictedReconstituted ComplexReconstituted ComplexProtein-peptide | FSW = 0.0432
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0716
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G66610 | PredictedSynthetic Rescue | FSW = 0.0469
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G21800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1070
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G36630 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT5G61050 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | HISTONE DEACETYLASE-RELATED / HD-RELATED |
AT5G62730 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.0512
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT1G56690 | PredictedGene fusion method | FSW = 0.0421
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT4G28010 | PredictedGene fusion method | FSW = 0.0655
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454