Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G47170 - ( ARF1A1C GTP binding / phospholipase activator/ protein binding )
16 Proteins interacs with AT2G47170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G24765 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.8500
| Class C:plasma membranegolgi | ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING |
AT3G62290 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5862
| Class C:plasma membrane | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G10630 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6939
| Class C:plasma membrane | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G70490 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4789
| Class C:plasma membrane | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G67560 | PredictedPhylogenetic profile method | FSW = 0.9127
| Unknown | ATARLA1D (ADP-RIBOSYLATION FACTOR-LIKE A1D) GTP BINDING |
AT3G22950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8947
| Unknown | ATARFC1 (ADP-RIBOSYLATION FACTOR C1) GTP BINDING |
AT1G23490 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.9444
| Unknown | ATARF1 (ADP-RIBOSYLATION FACTOR 1) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G17060 | PredictedPhylogenetic profile methodCo-expression | FSW = 1.0000
| Unknown | ATARFB1B GTP BINDING |
AT5G52210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3009
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G14670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5862
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G03120 | PredictedPhylogenetic profile methodCo-expression | FSW = 1.0000
| Unknown | ATARFB1C (ADP-RIBOSYLATION FACTOR B1C) GTP BINDING |
AT2G15310 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.9697
| Unknown | ATARFB1A (ADP-RIBOSYLATION FACTOR B1A) GTP BINDING |
AT1G02430 | PredictedPhylogenetic profile method | FSW = 0.9127
| Unknown | ATARFD1B (ADP-RIBOSYLATION FACTOR D1B) GTP BINDING |
AT5G37680 | PredictedPhylogenetic profile method | FSW = 0.9444
| Unknown | ATARLA1A (ADP-RIBOSYLATION FACTOR-LIKE A1A) GTP BINDING |
AT1G02440 | PredictedPhylogenetic profile method | FSW = 1.0000
| Unknown | ATARFD1A (ADP-RIBOSYLATION FACTOR D1A) GTP BINDING |
AT3G49860 | PredictedPhylogenetic profile method | FSW = 0.9127
| Unknown | ATARLA1B (ADP-RIBOSYLATION FACTOR-LIKE A1B) GTP BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454