Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G47210 - ( myb family transcription factor )
33 Proteins interacs with AT2G47210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1208
| Class C:nucleus | DNA HELICASE PUTATIVE |
AT5G22330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2325
| Class C:nucleus | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT1G17790 | PredictedAffinity Capture-MS | FSW = 0.1270
| Class C:nucleus | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
AT3G12810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1371
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G02740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1735
| Class C:nucleus | CHROMATIN BINDING |
AT2G36740 | PredictedAffinity Capture-MS | FSW = 0.0856
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G49240 | PredictedAffinity Capture-MS | FSW = 0.1070
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G31780 | Predictedtwo hybridtwo hybrid | FSW = 0.0087
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0023
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G49830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1069
| Unknown | DNA HELICASE-RELATED |
AT3G12110 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0649
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G26340 | Predictedtwo hybrid | FSW = 0.0134
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G15900 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0015
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G01960 | Predictedtwo hybridtwo hybrid | FSW = 0.0234
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G24870 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G45600 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-Western | FSW = 0.1701
| Unknown | GAS41 PROTEIN BINDING |
AT1G03760 | Predictedtwo hybridReconstituted ComplexAffinity Capture-Western | FSW = 0.1531
| Unknown | PREFOLDIN SUBUNIT FAMILY PROTEIN |
AT4G08990 | PredictedReconstituted Complextwo hybridAffinity Capture-Western | FSW = 0.0250
| Unknown | DNA (CYTOSINE-5-)-METHYLTRANSFERASE PUTATIVE |
AT3G12400 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | ELC UBIQUITIN BINDING |
AT5G13860 | Predictedtwo hybrid | FSW = 0.0056
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT1G54390 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1670
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G52740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1399
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G71530 | Predictedtwo hybrid | FSW = 0.0344
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G46650 | Predictedtwo hybrid | FSW = 0.1138
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT4G15770 | PredictedSynthetic Lethality | FSW = 0.0056
| Unknown | RNA BINDING / PROTEIN BINDING |
AT5G09740 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1541
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G19090 | Predictedtwo hybrid | FSW = 0.0857
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G38110 | Predictedtwo hybrid | FSW = 0.0839
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT4G36080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1794
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT5G13680 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT2G18000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.1998
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT2G17930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1524
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454