Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G47470 - ( UNE5 (UNFERTILIZED EMBRYO SAC 5) protein disulfide isomerase )
26 Proteins interacs with AT2G47470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G06530 | PredictedGene fusion method | FSW = 0.4700
| Class C:vacuole | MYOSIN HEAVY CHAIN-RELATED |
AT1G76040 | PredictedGene fusion method | FSW = 0.0504
| Class C:vacuole | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G11630 | PredictedGene fusion method | FSW = 0.0113
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT2G42500 | PredictedGene fusion method | FSW = 0.0231
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G06700 | PredictedGene fusion method | FSW = 0.1589
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT3G15890 | PredictedGene fusion method | FSW = 0.2841
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G01980 | PredictedGene fusion method | FSW = 0.1032
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G15640 | PredictedGene fusion method | FSW = 0.2294
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G46320 | PredictedGene fusion method | FSW = 0.0306
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G36450 | PredictedGene fusion method | FSW = 0.0263
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT2G39770 | PredictedGene fusion method | FSW = 0.0128
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT5G43380 | PredictedGene fusion method | FSW = 0.1032
| Unknown | TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G40070 | PredictedGene fusion method | FSW = 0.2581
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G61570 | PredictedGene fusion method | FSW = 0.3125
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G15790 | PredictedGene fusion method | FSW = 0.0108
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G47060 | PredictedGene fusion method | FSW = 0.1109
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT1G60940 | PredictedGene fusion method | FSW = 0.0627
| Unknown | SNRK210 (SNF1-RELATED PROTEIN KINASE 210) KINASE |
AT3G08910 | PredictedGene fusion method | FSW = 0.0765
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G62220 | PredictedGene fusion method | FSW = 0.3636
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT1G63230 | PredictedGene fusion method | FSW = 0.3728
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G73250 | PredictedGene fusion method | FSW = 0.1048
| Unknown | GER1 (GDP-4-KETO-6-DEOXYMANNOSE-35-EPIMERASE-4-REDUCTASE 1) GDP-L-FUCOSE SYNTHASE |
AT5G66880 | PredictedGene fusion method | FSW = 0.1500
| Unknown | SNRK23 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 23) KINASE/ PROTEIN KINASE |
AT1G07440 | PredictedGene fusion method | FSW = 0.0469
| Unknown | TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE |
AT5G66280 | PredictedGene fusion method | FSW = 0.0788
| Unknown | GMD1 (GDP-D-MANNOSE 46-DEHYDRATASE 1) GDP-MANNOSE 46-DEHYDRATASE/ BINDING / CATALYTIC/ COENZYME BINDING |
AT3G25210 | PredictedGene fusion method | FSW = 0.4118
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G278001) HAS 13348 BLAST HITS TO 4225 PROTEINS IN 143 SPECIES ARCHAE - 3 BACTERIA - 6 METAZOA - 114 FUNGI - 126 PLANTS - 12736 VIRUSES - 0 OTHER EUKARYOTES - 363 (SOURCE NCBI BLINK) |
AT1G12550 | PredictedGene fusion method | FSW = 0.0983
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454