Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G47870 - ( glutaredoxin family protein )

22 Proteins interacs with AT2G47870
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G26590

Predicted

biochemical

FSW = 0.0087

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0067

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G40370

Predicted

Phylogenetic profile method

FSW = 0.4014

Unknown

GLUTAREDOXIN PUTATIVE
AT1G10060

Predicted

two hybrid

FSW = 0.0201

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT2G38960

Predicted

biochemical

FSW = 0.0075

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT1G29230

Predicted

two hybrid

FSW = 0.0554

Unknown

CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G36280

Predicted

two hybrid

FSW = 0.0427

Unknown

ADENYLOSUCCINATE LYASE PUTATIVE / ADENYLOSUCCINASE PUTATIVE
AT2G29190

Predicted

two hybrid

FSW = 0.0110

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT4G14240

Predicted

biochemical

FSW = 0.0078

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT4G15660

Predicted

Phylogenetic profile method

FSW = 0.7640

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15680

Predicted

Phylogenetic profile method

FSW = 0.7640

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15700

Predicted

Phylogenetic profile method

FSW = 0.7722

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT3G62930

Predicted

Phylogenetic profile method

FSW = 0.5470

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT2G47880

Predicted

Phylogenetic profile method

FSW = 0.7640

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15690

Predicted

Phylogenetic profile method

FSW = 0.7640

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G06830

Predicted

Phylogenetic profile method

FSW = 0.3820

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G03020

Predicted

Phylogenetic profile method

FSW = 0.6767

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT3G62960

Predicted

Phylogenetic profile method

FSW = 0.5251

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT3G62950

Predicted

Phylogenetic profile method

FSW = 0.7640

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT2G30540

Predicted

Phylogenetic profile method

FSW = 0.7895

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G15670

Predicted

Phylogenetic profile method

FSW = 0.7640

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT5G18600

Predicted

Phylogenetic profile method

FSW = 0.7640

Unknown

GLUTAREDOXIN FAMILY PROTEIN

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454