Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G47990 - ( SWA1 (SLOW WALKER1) nucleotide binding )
82 Proteins interacs with AT2G47990| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G17360
   | PredictedAffinity Capture-MS | FSW = 0.1799
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT2G37270
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0672
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G22440
| PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.1756
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT4G33650
| PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.0468
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
| AT1G64190
| PredictedSynthetic Lethality | FSW = 0.0597
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
| AT1G10070
| Predictedbiochemical | FSW = 0.0156
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
| AT1G06380
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0299
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT3G06530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4153
| Unknown | BINDING |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.2864
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G36490
| Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-Westernsynthetic growth defecttwo hybridinterologs mapping | FSW = 0.0186
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT5G56350
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0444
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT1G55690
| PredictedReconstituted Complex | FSW = 0.0131
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT4G04340
| PredictedPhenotypic Enhancement | FSW = 0.0577
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT1G04750
| PredictedAffinity Capture-WesternCo-purification | FSW = 0.0387
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT3G19930
| Predictedinterologs mapping | FSW = 0.0144
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G14350
| PredictedPhenotypic Suppression | FSW = 0.0298
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT1G70490 | Predictedinterologs mapping | FSW = 0.0193
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
| AT3G53960
| PredictedAffinity Capture-Western | FSW = 0.0436
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
| AT1G07180
| PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.0939
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
| AT2G40360
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0299
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G63810
| PredictedAffinity Capture-MS | FSW = 0.3729
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT1G63780
| PredictedAffinity Capture-MS | FSW = 0.2267
| Unknown | IMP4 |
| AT3G56990
| PredictedAffinity Capture-MS | FSW = 0.3273
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
| AT3G58660
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0577
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
| AT4G25630
| PredictedAffinity Capture-MS | FSW = 0.2288
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT3G21540
| PredictedAffinity Capture-MS | FSW = 0.4160
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G05060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2594
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT2G36170 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0567
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
| AT2G40290
| PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT3G12860
| PredictedAffinity Capture-MS | FSW = 0.3741
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT3G62310
| PredictedAffinity Capture-MS | FSW = 0.1160
| Unknown | RNA HELICASE PUTATIVE |
| AT4G05410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4557
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G66540
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4563
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
| AT3G57000
| PredictedAffinity Capture-MS | FSW = 0.5088
| Unknown | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
| AT5G60980
| PredictedPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0261
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G38670
| Predictedtwo hybridtwo hybrid | FSW = 0.0105
| Unknown | PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1) ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
| AT5G35160
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1409
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G126501) HAS 1053 BLAST HITS TO 1004 PROTEINS IN 163 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 478 FUNGI - 143 PLANTS - 250 VIRUSES - 0 OTHER EUKARYOTES - 182 (SOURCE NCBI BLINK) |
| AT1G10490
| PredictedAffinity Capture-MS | FSW = 0.3203
| Unknown | UNKNOWN PROTEIN |
| AT1G18660
| Predictedtwo hybridtwo hybrid | FSW = 0.0140
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT1G06720
| PredictedAffinity Capture-MS | FSW = 0.4137
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
| AT1G15420
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1162
| Unknown | UNKNOWN PROTEIN |
| AT1G27040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationCo-purification | FSW = 0.0493
| Unknown | NITRATE TRANSPORTER PUTATIVE |
| AT1G42440
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1138
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT2G17250
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4509
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
| AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3129
| Unknown | BINDING |
| AT2G47420
| PredictedAffinity Capture-MS | FSW = 0.2831
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
| AT1G10210
| Predictedbiochemical | FSW = 0.0466
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
| AT1G15440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2462
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G29630
| PredictedAffinity Capture-Western | FSW = 0.0389
| Unknown | NUCLEASE |
| AT1G31660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2919
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G69070
| PredictedAffinity Capture-MS | FSW = 0.3710
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT1G72320
| PredictedAffinity Capture-MS | FSW = 0.3356
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
| AT1G80710
| Predictedsynthetic growth defect | FSW = 0.0287
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G10530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3665
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G21460
| PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0320
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
| AT3G53030
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0567
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
| AT3G60860
| PredictedSynthetic Lethality | FSW = 0.0200
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
| AT4G04940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4276
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G07410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5017
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G14000
| Predictedsynthetic growth defect | FSW = 0.0440
| Unknown | UNKNOWN PROTEIN |
| AT4G27130
| Predictedsynthetic growth defectAffinity Capture-Westernsynthetic growth defecttwo hybridPhenotypic Enhancement | FSW = 0.0557
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT4G28200
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5065
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
| AT4G28450
| PredictedAffinity Capture-MS | FSW = 0.4155
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G30991 | PredictedAffinity Capture-MS | FSW = 0.4142
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G08420
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2957
| Unknown | RNA BINDING |
| AT5G14050
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1863
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G15750
| PredictedAffinity Capture-MS | FSW = 0.4813
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
| AT5G16750
| PredictedAffinity Capture-MS | FSW = 0.2545
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G45620
| Predictedsynthetic growth defect | FSW = 0.0460
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT3G09720
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1609
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G13230
| PredictedAffinity Capture-MS | FSW = 0.2569
| Unknown | RNA BINDING |
| AT3G22290
| Predictedinterologs mapping | FSW = 0.0750
| Unknown | UNKNOWN PROTEIN |
| AT4G37680
| PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
| AT5G16040
| PredictedPhenotypic Suppression | FSW = 0.0101
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
| AT5G17860
| Predictedinterologs mapping | FSW = 0.0713
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT1G27470
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2586
| Unknown | TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED |
| AT4G17830
| PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | PEPTIDASE M20/M25/M40 FAMILY PROTEIN |
| AT1G01960
| PredictedSynthetic Lethality | FSW = 0.0219
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT4G12400
| PredictedGene fusion method | FSW = 0.0283
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT5G63320
| PredictedGene fusion method | FSW = 0.0613
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BROMODOMAIN (INTERPROIPR001487) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9) DNA BINDING (TAIRAT5G142701) HAS 44558 BLAST HITS TO 24285 PROTEINS IN 1236 SPECIES ARCHAE - 185 BACTERIA - 3450 METAZOA - 19774 FUNGI - 4003 PLANTS - 1404 VIRUSES - 349 OTHER EUKARYOTES - 15393 (SOURCE NCBI BLINK) |
| AT5G56310
| PredictedGene fusion method | FSW = 0.0566
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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