Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G01100 - ( HYP1 (HYPOTHETICAL PROTEIN 1) )

47 Proteins interacs with AT3G01100
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0354

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G09660

Predicted

Phenotypic Enhancement

FSW = 0.1240

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT1G64190

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3080

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G48860

Predicted

Phenotypic Enhancement

FSW = 0.1811

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT5G56350

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0556

Unknown

PYRUVATE KINASE PUTATIVE
AT1G75370

Predicted

Affinity Capture-MS

FSW = 0.0543

Unknown

SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHATIDYLINOSITOL TRANSFER-LIKE PROTEIN PUTATIVE
AT1G04750

Predicted

Phenotypic Enhancement

FSW = 0.1653

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G21680

Predicted

Phenotypic Enhancement

FSW = 0.1076

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0439

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G52250

Predicted

Phenotypic Enhancement

FSW = 0.0780

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT1G06960

Predicted

Affinity Capture-Western

FSW = 0.0842

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT2G30160

Predicted

Phenotypic Enhancement

FSW = 0.1546

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G02730

Predicted

Phenotypic Enhancement

FSW = 0.0970

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G54840

Predicted

Phenotypic Enhancement

FSW = 0.1353

Unknown

ARA6 GTP BINDING / GTPASE
AT2G03120

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT4G39200

Predicted

Phenotypic Enhancement

FSW = 0.1840

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT3G13900

Predicted

Synthetic Lethality

FSW = 0.1247

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT2G29540

Predicted

Phenotypic Enhancement

FSW = 0.0137

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G07820Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2597

Unknown

HISTONE H4
AT1G44180

Predicted

Phenotypic Enhancement

FSW = 0.0836

Unknown

AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G47830

Predicted

Phenotypic Enhancement

FSW = 0.1231

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G54560Predicted

Phenotypic Enhancement

FSW = 0.1259

Unknown

XIE MOTOR/ PROTEIN BINDING
AT2G19220

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Reconstituted Complex

co-fractionation

Co-fractionation

FSW = 0.4338

Unknown

UNKNOWN PROTEIN
AT2G37420

Predicted

Phenotypic Enhancement

FSW = 0.1684

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT2G20290

Predicted

Affinity Capture-MS

FSW = 0.0750

Unknown

XIG MOTOR/ PROTEIN BINDING
AT2G32160

Predicted

Phenotypic Enhancement

FSW = 0.0703

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK)
AT3G22290

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

Co-purification

FSW = 0.1921

Unknown

UNKNOWN PROTEIN
AT4G27130

Predicted

Phenotypic Enhancement

FSW = 0.1558

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G01770

Predicted

Reconstituted Complex

interologs mapping

FSW = 0.3143

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G17860

Predicted

Affinity Capture-Western

Reconstituted Complex

Co-purification

FSW = 0.2911

Unknown

CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G45620

Predicted

Affinity Capture-Western

FSW = 0.1828

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G47080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-purification

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.1439

Unknown

CKB1 PROTEIN KINASE REGULATOR
AT5G49560

Predicted

Phenotypic Enhancement

FSW = 0.0572

Unknown

UNKNOWN PROTEIN
AT3G02000

Predicted

Phenotypic Enhancement

FSW = 0.0950

Unknown

ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G06470

Predicted

Phenotypic Enhancement

FSW = 0.0339

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G27580

Predicted

Affinity Capture-MS

FSW = 0.0497

Unknown

ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G55020

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT4G04950

Predicted

Affinity Capture-MS

FSW = 0.0164

Unknown

THIOREDOXIN FAMILY PROTEIN
AT4G19560

Predicted

Phenotypic Enhancement

FSW = 0.0963

Unknown

CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G21480

Predicted

Affinity Capture-MS

FSW = 0.0156

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G23895

Predicted

Phenotypic Enhancement

FSW = 0.0100

Unknown

PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED
AT5G14060

Predicted

Phenotypic Enhancement

FSW = 0.1458

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G16980

Predicted

Phenotypic Enhancement

FSW = 0.1560

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G44830

Predicted

Phenotypic Enhancement

FSW = 0.2178

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G64760

Predicted

Phenotypic Enhancement

FSW = 0.1429

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT3G54510

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0504

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G69450

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0379

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM MEMBRANE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF221 (INTERPROIPR003864) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS HYP1 (HYPOTHETICAL PROTEIN 1) (TAIRAT3G011001) HAS 911 BLAST HITS TO 825 PROTEINS IN 137 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 442 PLANTS - 243 VIRUSES - 0 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454