Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G01100 - ( HYP1 (HYPOTHETICAL PROTEIN 1) )
47 Proteins interacs with AT3G01100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0354
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.1240
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G64190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3080
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.1811
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT5G56350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0556
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G75370 | PredictedAffinity Capture-MS | FSW = 0.0543
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHATIDYLINOSITOL TRANSFER-LIKE PROTEIN PUTATIVE |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.1653
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.1076
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0439
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G52250 | PredictedPhenotypic Enhancement | FSW = 0.0780
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G06960 | PredictedAffinity Capture-Western | FSW = 0.0842
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1546
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0970
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.1353
| Unknown | ARA6 GTP BINDING / GTPASE |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.1840
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT3G13900 | PredictedSynthetic Lethality | FSW = 0.1247
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT2G29540 | PredictedPhenotypic Enhancement | FSW = 0.0137
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G07820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2597
| Unknown | HISTONE H4 |
AT1G44180 | PredictedPhenotypic Enhancement | FSW = 0.0836
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G47830 | PredictedPhenotypic Enhancement | FSW = 0.1231
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G54560 | PredictedPhenotypic Enhancement | FSW = 0.1259
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT2G19220 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionation | FSW = 0.4338
| Unknown | UNKNOWN PROTEIN |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.1684
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G32160 | PredictedPhenotypic Enhancement | FSW = 0.0703
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT3G22290 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.1921
| Unknown | UNKNOWN PROTEIN |
AT4G27130 | PredictedPhenotypic Enhancement | FSW = 0.1558
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G01770 | PredictedReconstituted Complexinterologs mapping | FSW = 0.3143
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G17860 | PredictedAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.2911
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G45620 | PredictedAffinity Capture-Western | FSW = 0.1828
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G47080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationCo-purificationAffinity Capture-MSCo-purification | FSW = 0.1439
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G49560 | PredictedPhenotypic Enhancement | FSW = 0.0572
| Unknown | UNKNOWN PROTEIN |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.0950
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G06470 | PredictedPhenotypic Enhancement | FSW = 0.0339
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G55020 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT4G04950 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G19560 | PredictedPhenotypic Enhancement | FSW = 0.0963
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G23895 | PredictedPhenotypic Enhancement | FSW = 0.0100
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.1458
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G16980 | PredictedPhenotypic Enhancement | FSW = 0.1560
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.2178
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1429
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT3G54510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0504
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G69450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0379
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM MEMBRANE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF221 (INTERPROIPR003864) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS HYP1 (HYPOTHETICAL PROTEIN 1) (TAIRAT3G011001) HAS 911 BLAST HITS TO 825 PROTEINS IN 137 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 442 PLANTS - 243 VIRUSES - 0 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454