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AT3G01280 - ( VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) voltage-gated anion channel )

85 Proteins interacs with AT3G01280

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G29130	Experimental	FSW = 0.0222	Class A: vacuole unclear mitochondrion Class B: plastid plasma membrane Class D: cytosol (p = 0.67)	HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT5G15090	Predicted Synthetic Lethality	FSW = 0.0143	Class C: vacuole unclear plastid plasma membrane mitochondrion	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT5G67500	Predicted Gene fusion method Co-expression	FSW = 0.0280	Class C: vacuole unclear plastid mitochondrion	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT2G01250	Predicted Affinity Capture-MS	FSW = 0.0810	Class C: vacuole plastid plasma membrane	60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT3G12580	Predicted Affinity Capture-MS	FSW = 0.0465	Class C: vacuole plasma membrane mitochondrion	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT1G76040	Predicted Affinity Capture-MS	FSW = 0.0262	Class C: vacuole plasma membrane	CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.0075	Class C: vacuole plasma membrane	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G54270	Predicted Affinity Capture-MS	FSW = 0.0489	Class C: vacuole plasma membrane	EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT4G37910	Predicted Affinity Capture-MS Co-expression	FSW = 0.0014	Class C: vacuole mitochondrion	MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT1G14010	Predicted two hybrid Affinity Capture-MS	FSW = 0.4234	Class C: vacuole	EMP24/GP25L/P24 FAMILY PROTEIN
AT3G19980	Predicted Affinity Capture-Western two hybrid two hybrid Affinity Capture-Western Co-purification	FSW = 0.0254	Class C: unclear	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G22890	Predicted Affinity Capture-MS	FSW = 0.0089	Class C: plastid plasma membrane	APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT3G09820	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3579	Class C: plastid plasma membrane	ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT1G16880	Predicted Affinity Capture-MS	FSW = 0.1263	Class C: plastid	URIDYLYLTRANSFERASE-RELATED
AT1G18870	Predicted Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Reconstituted Complex Affinity Capture-MS Synthetic Lethality	FSW = 0.2950	Class C: plastid	ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE
AT2G14120	Predicted Affinity Capture-MS	FSW = 0.0525	Class C: plasma membrane mitochondrion	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT2G21540	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1707	Class C: plasma membrane	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT2G27500	Predicted Affinity Capture-MS	FSW = 0.0781	Class C: plasma membrane	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT4G08690	Predicted Affinity Capture-MS	FSW = 0.3378	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G04720	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1424	Class C: plasma membrane	CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G56450	Predicted Affinity Capture-MS	FSW = 0.0248	Class C: plasma membrane	ALPHA-SNAP1 BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT2G20580	Predicted two hybrid Affinity Capture-Western two hybrid Affinity Capture-Western two hybrid Co-purification far western blotting	FSW = 0.0350	Class C: plasma membrane	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT4G35310	Predicted Affinity Capture-MS	FSW = 0.0486	Class C: plasma membrane	CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G45380	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4030	Class C: plasma membrane	SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT3G46900	Predicted Affinity Capture-MS	FSW = 0.2298	Class C: plasma membrane	COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT4G12590	Predicted Synthetic Lethality	FSW = 0.0096	Class C: mitochondrion	UNKNOWN PROTEIN
AT1G13560	Predicted two hybrid	FSW = 0.0296	Class C: mitochondrion	AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G08980	Predicted Affinity Capture-MS	FSW = 0.4120	Class C: mitochondrion	SIGNAL PEPTIDASE I FAMILY PROTEIN
AT3G55605	Predicted Affinity Capture-MS	FSW = 0.1344	Class C: mitochondrion	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT3G20970	Predicted Affinity Capture-MS	FSW = 0.0449	Class C: mitochondrion	NFU4 STRUCTURAL MOLECULE
AT2G18450	Predicted Affinity Capture-MS	FSW = 0.0534	Class C: mitochondrion	SDH1-2 SUCCINATE DEHYDROGENASE
AT4G10040	Predicted Affinity Capture-MS in vitro in vivo	FSW = 0.0169	Class C: mitochondrion	CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT5G59950	Predicted Affinity Capture-MS	FSW = 0.0568	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT4G14340	Predicted Affinity Capture-MS	FSW = 0.2623	Unknown	CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G59960	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3979	Unknown	UNKNOWN PROTEIN
AT5G44500	Predicted Affinity Capture-MS	FSW = 0.0560	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT3G52250	Predicted Affinity Capture-MS	FSW = 0.0134	Unknown	DNA BINDING / TRANSCRIPTION FACTOR
AT1G30810	Predicted Affinity Capture-MS	FSW = 0.4092	Unknown	TRANSCRIPTION FACTOR
AT2G38960	Predicted Affinity Capture-MS	FSW = 0.1958	Unknown	AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT3G16050	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0955	Unknown	A37 PROTEIN HETERODIMERIZATION
AT5G47720	Predicted two hybrid	FSW = 0.0556	Unknown	ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT2G27550	Predicted Affinity Capture-MS	FSW = 0.0879	Unknown	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING
AT4G17190	Predicted Affinity Capture-MS	FSW = 0.2105	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G06790	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2568	Unknown	RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G24706	Predicted two hybrid Affinity Capture-Western Protein-RNA Reconstituted Complex Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.1268	Unknown	UNKNOWN PROTEIN
AT1G27080	Predicted Affinity Capture-MS	FSW = 0.1134	Unknown	NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G74250	Predicted Affinity Capture-MS	FSW = 0.2813	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G20410	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3542	Unknown	ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G29680	Predicted Affinity Capture-MS	FSW = 0.2696	Unknown	CDC6 (CELL DIVISION CONTROL 6)
AT2G29940	Predicted Affinity Capture-MS	FSW = 0.3821	Unknown	PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G31060	Predicted Affinity Capture-MS	FSW = 0.3218	Unknown	ELONGATION FACTOR FAMILY PROTEIN
AT1G05660	Predicted Affinity Capture-MS	FSW = 0.0224	Unknown	POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G10350	Predicted Affinity Capture-MS	FSW = 0.2355	Unknown	DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G58520	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1307	Unknown	HYDROLASE ACTING ON ESTER BONDS / LIPASE
AT1G63660	Predicted Affinity Capture-MS	FSW = 0.0948	Unknown	GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT1G74810	Predicted Affinity Capture-MS	FSW = 0.0220	Unknown	BOR5 ANION EXCHANGER
AT2G19910	Predicted Affinity Capture-MS	FSW = 0.1249	Unknown	RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G27920	Predicted Affinity Capture-MS	FSW = 0.0343	Unknown	SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE
AT2G34180	Predicted two hybrid	FSW = 0.0056	Unknown	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G47570	Predicted Affinity Capture-MS	FSW = 0.0624	Unknown	60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT3G05760	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3211	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G53730	Predicted Affinity Capture-MS	FSW = 0.1677	Unknown	HISTONE H4
AT3G53880	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.2919	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G59410	Predicted Affinity Capture-MS	FSW = 0.0955	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G00810	Predicted Affinity Capture-MS	FSW = 0.2061	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B)
AT4G14320	Predicted two hybrid	FSW = 0.0182	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB)
AT4G35620	Predicted far western blotting Co-purification Affinity Capture-Western two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS co-fractionation Co-fractionation far western blotting	FSW = 0.2206	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G36050	Predicted Affinity Capture-MS	FSW = 0.0087	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G06140	Predicted two hybrid	FSW = 0.0065	Unknown	SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.0375	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G16960	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4194	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G17000	Predicted Affinity Capture-MS	FSW = 0.1319	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19150	Predicted Affinity Capture-MS	FSW = 0.1186	Unknown	CARBOHYDRATE KINASE FAMILY
AT5G59850	Predicted Affinity Capture-MS	FSW = 0.0196	Unknown	40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT5G59890	Predicted Affinity Capture-MS two hybrid Affinity Capture-MS Reconstituted Complex two hybrid Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-MS two hybrid Reconstituted Complex Synthetic Rescue Synthetic Lethality	FSW = 0.2874	Unknown	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT3G52590	Predicted Affinity Capture-MS	FSW = 0.2424	Unknown	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G26230	Predicted Affinity Capture-Western	FSW = 0.0365	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G29910	Predicted Affinity Capture-MS	FSW = 0.2683	Unknown	ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT4G31770	Predicted Affinity Capture-MS	FSW = 0.2950	Unknown	CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT4G31985	Predicted Affinity Capture-MS	FSW = 0.1704	Unknown	60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT5G04800	Predicted two hybrid	FSW = 0.0084	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G19820	Predicted Affinity Capture-Western	FSW = 0.0783	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G20060	Predicted two hybrid two hybrid two hybrid Affinity Capture-Western	FSW = 0.1833	Unknown	PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT5G49560	Predicted two hybrid	FSW = 0.0460	Unknown	UNKNOWN PROTEIN
AT4G30160	Predicted in vitro in vivo	FSW = 0.0113	Unknown	VLN4 (ARABIDOPSIS THALIANA VILLIN 4) ACTIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G01280 - ( VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) voltage-gated anion channel )

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